Difference between revisions of "The Compendium of Cancer Genome Aberrations"

From Compendium of Cancer Genome Aberrations
Jump to navigation Jump to search
[unchecked revision][checked revision]
 
(88 intermediate revisions by 3 users not shown)
Line 1: Line 1:
'''Welcome to the Compendium of Cancer Genome Aberrations (CCGA)! The CCGA is a collaborative effort to document and describe chromosome and other genomic abnormalities in cancer structured based on current WHO classification. The Wiki style interface allows for real-time editing and content sharing within our genetics community. This resource is sponsored and supported by the [http://www.cancergenomics.org <u>Cancer Genomics Consortium (CGC)</u>] and contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer.'''
+
<br>
 
 
*Join the CCGA community!  If you would like to contribute as an author, please complete a few brief questions on our '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 <u>Volunteer Form</u>]'''.
 
 
 
*'''[Mailto:CCGA@cancergenomics.org <u>Contact us</u>]''' for more information or suggestions for updates.
 
 
 
*Meet our editorial '''<u>[[Leadership|Editorial Leadership]]</u>''', and '''<u>[[CCGA Workgroup|CCGA Workgroup Members]]</u>'''.
 
 
 
*For contributors, we've created a '''<u>[[Video_Tutorial|Video Tutorial]]</u>''' demonstrating how to add content to the CCGA. Please also refer to helpful '''<u>[[Author Instructions|Author Instructions]]</u>'''.
 
*Become a part of our Twitter family for the latest updates [https://twitter.com/ccgawiki '''@ccgawiki'''].
 
 
 
{{Box-round|title=Newest Items|titlebackground=#06B5AD|Explore the great content available in '''<u>[[Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms|Acute Myeloid Leukemia (AML)]]</u>''', '''<u>[[Myelodysplastic Syndromes (MDS)|Myelodysplastic Syndromes (MDS)]]</u>''', '''<u>[[Myeloproliferative Neoplasms (MPN)|Myeloproliferative Neoplasms (MPN)]]</u>''', and '''<u>[[Myelodysplastic/Myeloproliferative Neoplasms (MDS/MPN)|Myelodysplastic/Myeloproliferative Neoplasms (MDS/MPN)]]</u>'''.
 
}}
 
<br />
 
 
<inputbox>
 
<inputbox>
 
type=search2
 
type=search2
Line 18: Line 5:
 
placeholder=enter search term
 
placeholder=enter search term
 
</inputbox>
 
</inputbox>
[[File:Generic book cover heme and lymphoid.jpg|thumb|link=Tumours of Haematopoietic and Lymphoid Tissues|Search content structured based on the WHO Classification ('''click book image'''). ''Reference: World Health Organization Classification of Tumours of Haematopoietic and Lymphoid Tissues, Revised 4th edition. IARC Press: Lyon, France, 2017. The hierarchical tumour classification structure is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.'']]
+
<br>
  
 +
[[File:Generic book cover heme and lymphoid.jpg|thumb|link=HAEM5:Table_of_Contents|Search content structured based on the WHO Classification ('''click book image'''). ''Reference: WHO Classification of Tumours Editorial Board. [https://tumourclassification.iarc.who.int/chapters/63 Haematolymphoid tumours] [Internet; beta version ahead of print]. Lyon (France): International Agency for Research on Cancer; 2022. The hierarchical tumour classification structure is reproduced from the [https://tumourclassification.iarc.who.int/welcome/ WHO Classification of Tumours] with permission from the copyright holder, ©International Agency for Research on Cancer.''|alt=]]
 +
<br>
 +
 +
'''Welcome to the Compendium of Cancer Genome Aberrations (CCGA)! The CCGA is a collaborative effort to document and describe clinically relevant chromosomal and other genomic abnormalities in cancer structured based on [https://tumourclassification.iarc.who.int/welcome/ current WHO classification] as published by [https://whobluebooks.iarc.fr/about/ IARC]. The Wiki style interface allows for real-time editing and content sharing within our genetics community. This resource is sponsored and supported by the [http://www.cancergenomics.org <u>Cancer Genomics Consortium (CGC)</u>] and contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer.'''
 +
<br>
 +
<br>
 +
 +
*Join the CCGA community!  If you would like to contribute as an '''<u>[[Description of CCGA Roles|Author or Other Role]]</u>''', please complete a few brief questions on our '''[https://mms.cancergenomics.org/members/form.php?orgcode=CGC&fid=3830649 <u>Volunteer Form</u>]'''.  We are creating content for all diseases with genetic findings in the current WHO Classification of Tumours books. [[Volunteer Assignments and Opportunities|'''<u>Please join the effort by looking through the authorship opportunities</u>''']]!
 +
 +
*'''[Mailto:CCGA@cancergenomics.org <u>Contact us</u>]''' for more information or suggestions for updates.
  
[[File:Inv 16 pathology.png |100px|link=:Category:Diseases]] '''Diseases''' '''[[:Category:Diseases A|A]]'''  
+
*Meet our '''<u>[[Leadership|Editorial Leadership]]</u>''', '''<u>[[CCGA Workgroup|CCGA Workgroup Members]]</u>''' and [[Communications Liaison|<u>'''Communications Liaison'''</u>]].
| '''[[:Category:Diseases B|B]]''' | '''[[:Category:Diseases C|C]]''' | '''[[:Category:Diseases D|D]]''' | '''[[:Category:Diseases E|E]]''' | '''[[:Category:Diseases F|F]]'''
 
| '''[[:Category:Diseases G|G]]''' | '''[[:Category:Diseases H|H]]''' | '''[[:Category:Diseases I|I]]''' | '''[[:Category:Diseases J|J]]''' | '''[[:Category:Diseases K|K]]''' | '''[[:Category:Diseases L|L]]''' | '''[[:Category:Diseases M|M]]''' | '''[[:Category:Diseases N|N]]''' | '''[[:Category:Diseases O|O]]''' | '''[[:Category:Diseases P|P]]''' | '''[[:Category:Diseases Q|Q]]''' | '''[[:Category:Diseases R|R]]''' | '''[[:Category:Diseases S|S]]''' | '''[[:Category:Diseases T|T]]''' | '''[[:Category:Diseases U|U]]'''
 
| '''[[:Category:Diseases V|V]]''' | '''[[:Category:Diseases W|W]]''' | '''[[:Category:Diseases X|X]]''' | '''[[:Category:Diseases Y|Y]]''' | '''[[:Category:Diseases Z|Z]]'''
 
  
 +
*For contributors, we've created a '''<u>[[Video Tutorials]]</u>''' demonstrating how to add content to the CCGA. Please also refer to helpful '''<u>[[Author Instructions|Author Instructions]]</u>'''.
  
[[File:Example_translocation.png|100px|link=:Category:Structural Abnormalities]] '''Structural Abnormalities''' '''[[:Category:Structural Abnormalities Chromosome 1|1]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 2|2]]''' | '''[[:Category:Structural Abnormalities Chromosome 3|3]]''' | '''[[:Category:Structural Abnormalities Chromosome 4|4]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 5|5]]''' | '''[[:Category:Structural Abnormalities Chromosome 6|6]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 7|7]]''' | '''[[:Category:Structural Abnormalities Chromosome 8|8]]''' | '''[[:Category:Structural Abnormalities Chromosome 9|9]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 10|10]]''' | '''[[:Category:Structural Abnormalities Chromosome 11|11]]''' | '''[[:Category:Structural Abnormalities Chromosome 12|12]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 13|13]]''' | '''[[:Category:Structural Abnormalities Chromosome 14|14]]''' | '''[[:Category:Structural Abnormalities Chromosome 15|15]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 16|16]]''' | '''[[:Category:Structural Abnormalities Chromosome 17|17]]''' | '''[[:Category:Structural Abnormalities Chromosome 18|18]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 19|19]]''' | '''[[:Category:Structural Abnormalities Chromosome 20|20]]''' | '''[[:Category:Structural Abnormalities Chromosome 21|21]]'''
 
| '''[[:Category:Structural Abnormalities Chromosome 22|22]]''' | '''[[:Category:Structural Abnormalities Chromosome X|X]]''' | '''[[:Category:Structural Abnormalities Chromosome Y|Y]]'''
 
  
  
[[File:Fish_zoomed.png|100px|link=:Category:Cancer Genes]] '''Cancer Genes''' '''[[:Category:Cancer Genes A|A]]'''
+
[[File:CGC logo only.png|100px|link=Main_Page]]<span id="fp-span-cgc-pre"> '''CGC Workgroups Recurrent Loci Tables'''</span><span id="fp-span-cgc" style="display: block; margin-top: -62px; margin-left: 385px;"> [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]] | [[Recurrent Genomic Alterations in Pediatric and Adult Central Nervous System Tumors Detected by Chromosomal Microarray|CNS Tumors]] | [[Plasma Cell Neoplasms Tables: Recurrent Cytogenomic Alterations|Plasma Cell Neoplasms]] | [[Breast Cancer Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|Breast Cancer]] | [[Renal Cell Neoplasia Tables: Recurrent Cytogenomic Alterations|Renal Neoplasia]] | [[B-ALL Tables: Prognostic Genomic Abnormalities and Recurrent Gene Fusions|B-ALL]]</span>
| '''[[:Category:Cancer Genes B|B]]''' | '''[[:Category:Cancer Genes C|C]]''' | '''[[:Category:Cancer Genes D|D]]''' | '''[[:Category:Cancer Genes E|E]]''' | '''[[:Category:Cancer Genes F|F]]'''
 
| '''[[:Category:Cancer Genes G|G]]''' | '''[[:Category:Cancer Genes H|H]]''' | '''[[:Category:Cancer Genes I|I]]''' | '''[[:Category:Cancer Genes J|J]]''' | '''[[:Category:Cancer Genes K|K]]''' | '''[[:Category:Cancer Genes L|L]]''' | '''[[:Category:Cancer Genes M|M]]''' | '''[[:Category:Cancer Genes N|N]]''' | '''[[:Category:Cancer Genes O|O]]''' | '''[[:Category:Cancer Genes P|P]]''' | '''[[:Category:Cancer Genes Q|Q]]''' | '''[[:Category:Cancer Genes R|R]]''' | '''[[:Category:Cancer Genes S|S]]''' | '''[[:Category:Cancer Genes T|T]]''' | '''[[:Category:Cancer Genes U|U]]'''
 
| '''[[:Category:Cancer Genes V|V]]''' | '''[[:Category:Cancer Genes W|W]]''' | '''[[:Category:Cancer Genes X|X]]''' | '''[[:Category:Cancer Genes Y|Y]]''' | '''[[:Category:Cancer Genes Z|Z]]'''
 
<br /><br /><br />
 
[[File:Circos.png|100px|link=Main_Page]] '''Cancer Genomes''' [[Hematologic and Lymphoid]] | [[Solid Tumors]] | [[CNS]] | [[Pediatric]]
 
<br>
 
<br>
 
[[File:CGC logo only.png|100px|link=Main_Page]] '''CGC Workgroups Recurrent Loci Tables''' [[AML Table: Recurrent Genomic Alterations Detected by Chromosomal Microarray|AML]] | [[MDS, MDS/MPN and MPN Tables: Recurrent Genomic Alterations Detected by Chromosomal Microarray|MDS/MPN]] | [[CLL Tables: Regions of Recurrent Copy Number Change and CN-LOH|CLL]]  
 
 
<br>
 
<br>
 
<br>
 
<br>
 
<br>
 
<br>
<div style="clear: both;"></div>
+
<div id="bottom-fp-links" style="margin: auto;">
<div style="margin: auto;">
 
 
<div style="height:150px;">
 
<div style="height:150px;">
<div style="width: 24%; float: left;">
+
              <div class="bottom-fp-links-column" style="width: 10%; float: left;">
<div style="float: left; padding-right: 10px; height: 150px;">
+
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
[[File:Plus2.png|30px|link=About]]
+
[[File:Logo-black.png.twimg.2560.png|30px|link=https://twitter.com/ccgawiki]]
 
</div>
 
</div>
<div>
+
<div> </div>
<h4>[[Submit an Article]]</h4>
+
</div>
[[Video Tutorial]]
+
<div class="bottom-fp-links-column" style="width: 10%; float: left;">
                               
+
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
[[Acute Myeloid Leukemia (AML) with t(8;21)(q22;q22.1); RUNX1-RUNX1T1|Example Article]]
+
[[File:174857.png|30px|link=https://www.linkedin.com/company/102061440/admin/dashboard/]]
 
 
[[:Category:Recently Added Pages|Recently Added Pages]]
 
 
</div>
 
</div>
 +
<div> </div>
 
</div>
 
</div>
<div style="width: 24%; float: left;">
+
              <div class="bottom-fp-links-column" style="width: 15%; float: left;">
<div style="float: left; padding-right: 10px; height: 150px;">
+
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
[[File:Star.png|45px|link=About]]
+
[[File:Plus2.png|30px|link=[[Video Tutorials]]]]
 
</div>
 
</div>
 
<div>
 
<div>
<h4>[[Resources]]</h4>
+
<h4>[[Video Tutorials]]</h4>
[[Bed Files]]
 
 
 
[[Technical Standards and Protocols]]
 
 
 
[[Analysis Pipelines]]
 
 
 
[[Educational Materials]]
 
 
 
 
</div>
 
</div>
 
</div>
 
</div>
<div style="width: 24%; float: left;">
+
<div class="bottom-fp-links-column" style="width: 15%; float: left;">
 
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
 
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
[[File:Arrow.png|30px|link=About]]
+
[[File:Arrow.png|30px|link=[[Join Us!]]]]
 
</div>
 
</div>
 
<div>
 
<div>
 
<h4>[[Join Us!]]</h4>
 
<h4>[[Join Us!]]</h4>
[[Request Membership]]
 
  
 
</div>
 
</div>
 
</div>
 
</div>
                 <div style="width: 24%; float: left;">
+
                 <div class="bottom-fp-links-column" style="width: 15%; float: left;">
<div style="float: left; padding-left: 10px; padding-right: 20px; height: 150px;">
+
<div style="float: left; padding-left: 10px; padding-right: 15px; height: 150px;">
[[File:Ask.png|30px|link=About]]
+
[[File:Ask.png|30px|link=[[Frequently Asked Questions (FAQs)]]]]
 
</div>
 
</div>
 
<div>
 
<div>
<h4>[[Frequently Asked Questions (FAQs)|FAQ]]</h4>
+
<h4>[[Frequently Asked Questions (FAQs)|Frequently Asked Questions (FAQs)]]</h4>
[[Frequently Asked Questions (FAQs)|Frequently Asked Questions]]
 
  
 
</div>
 
</div>
Line 105: Line 71:
 
 
 
</div>
 
</div>
 
 
{{Template:Disclaimer}}
 
  
 
__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__

Latest revision as of 14:03, 23 October 2024


 


Search content structured based on the WHO Classification (click book image). Reference: WHO Classification of Tumours Editorial Board. Haematolymphoid tumours [Internet; beta version ahead of print]. Lyon (France): International Agency for Research on Cancer; 2022. The hierarchical tumour classification structure is reproduced from the WHO Classification of Tumours with permission from the copyright holder, ©International Agency for Research on Cancer.


Welcome to the Compendium of Cancer Genome Aberrations (CCGA)! The CCGA is a collaborative effort to document and describe clinically relevant chromosomal and other genomic abnormalities in cancer structured based on current WHO classification as published by IARC. The Wiki style interface allows for real-time editing and content sharing within our genetics community. This resource is sponsored and supported by the Cancer Genomics Consortium (CGC) and contributed to by colleagues with an interest in clinical cytogenetics, molecular genetics and genomics in cancer.

  • Contact us for more information or suggestions for updates.


CGC logo only.png CGC Workgroups Recurrent Loci Tables AML | MDS/MPN | CLL | CNS Tumors | Plasma Cell Neoplasms | Breast Cancer | Renal Neoplasia | B-ALL