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B-ALL Tables: Prognostic Genomic Abnormalities and Recurrent Gene Fusions (view source)
Revision as of 13:13, 22 July 2021
, 13:13, 22 July 2021Added gene links
'''B-ALL'''
'''B-ALL'''
| rowspan="12" |'''''[[ABL1]]''''' (9q34)
| rowspan="12" |'''''[[ABL1]]''''' (9q34)
|''CENPC1''
|''[[CENPC1]]''
|t(4;9)(q13;q34)
|t(4;9)(q13;q34)
|''CENPC1-ABL1''
|''CENPC1-ABL1''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''ETV6''
|''[[ETV6]]''
|t(9;12)(q34;p13)
|t(9;12)(q34;p13)
|''ETV6-ABL1''
|''ETV6-ABL1''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''FOXP1''
|''[[FOXP1]]''
|t(3;9)(p13;q34)
|t(3;9)(p13;q34)
|''FOXP1-ABL1'' on der(3)
|''FOXP1-ABL1'' on der(3)
|
|
|-
|-
|''LSM14A''
|''[[LSM14A]]''
|t(9;19)(q34;q13.1)
|t(9;19)(q34;q13.1)
|''LSM14A-ABL1'' on der(19)
|''LSM14A-ABL1'' on der(19)
|
|
|-
|-
|''NUP153''
|''[[NUP153]]''
|t(6;9)(p22.3;q34)
|t(6;9)(p22.3;q34)
|''NUP153-ABL1'' on der(6)
|''NUP153-ABL1'' on der(6)
|
|
|-
|-
|''NUP214''
|''[[NUP214]]''
|dup(9)(q34.1q34.1)
|dup(9)(q34.1q34.1)
|''NUP214-ABL1''
|''NUP214-ABL1''
|Tandem duplication (~370 kb) detectable by CMA
|Tandem duplication (~370 kb) detectable by CMA
|-
|-
|''RANBP2''
|''[[RANBP2]]''
|t(2;9)(q12.3;q34)
|t(2;9)(q12.3;q34)
|''RANBP-ABL1'' on der(2)
|''RANBP-ABL1'' on der(2)
|
|
|-
|-
|''RCSD1''
|''[[RCSD1]]''
|t(1;9)(q24.2;q34)
|t(1;9)(q24.2;q34)
|''RCSD1-ABL1'' on der(1)
|''RCSD1-ABL1'' on der(1)
|
|
|-
|-
|''SFPQ''
|''[[SFPQ]]''
|t(1;9)(p34.3;q34)
|t(1;9)(p34.3;q34)
|''SFPQ-ABL1'' on der(1)
|''SFPQ-ABL1'' on der(1)
|
|
|-
|-
|''SNX1''
|''[[SNX1]]''
|t(9;15)(q34;q22.3)
|t(9;15)(q34;q22.3)
|''SNX1-ABL1'' on der(15)
|''SNX1-ABL1'' on der(15)
|
|
|-
|-
|''SNX2''
|''[[SNX2]]''
|t(5;9)(q23.2;q34)
|t(5;9)(q23.2;q34)
|''SNX2-ABL1'' on der(5)
|''SNX2-ABL1'' on der(5)
|
|
|-
|-
|''ZMIZ1''
|''[[ZMIZ1]]''
|t(9;10)(q34;q22.3)
|t(9;10)(q34;q22.3)
|''ZMIZ1-ABL1'' on der(10)
|''ZMIZ1-ABL1'' on der(10)
|-
|-
| rowspan="3" |'''''[[ABL2]]''''' (1q25.2)
| rowspan="3" |'''''[[ABL2]]''''' (1q25.2)
|''PAG1''
|''[[PAG1]]''
|t(1;8)(q25.2;q21.1)
|t(1;8)(q25.2;q21.1)
|''PAG1-ABL2'' on der(1)
|''PAG1-ABL2'' on der(1)
|
|
|-
|-
|''RCSD1''
|''[[RCSD1]]''
|1q24.2q25.2 rearrangement
|1q24.2q25.2 rearrangement
|''RCSD1-ABL2''
|''RCSD1-ABL2''
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|-
|-
|''ZC3HAV1''
|''[[ZC3HAV1]]''
|t(1;7)(q25.2;q34)
|t(1;7)(q25.2;q34)
|''ZC3HAV1-ABL2'' on der(1)
|''ZC3HAV1-ABL2'' on der(1)
(Xp22.3 & Yp11.3)
(Xp22.3 & Yp11.3)
|''IGH''
|''[[IGH]]''
|t(X;14)(p22.3;q32) or
|t(X;14)(p22.3;q32) or
|
|
|-
|-
|''P2RY8''
|''[[P2RY8]]''
|del(X)(p22.3p22.3) or del(Y)(p11.3p11.3)
|del(X)(p22.3p22.3) or del(Y)(p11.3p11.3)
|''P2RY8-CRLF2''
|''P2RY8-CRLF2''
|-
|-
| rowspan="3" |'''''[[CSF1R]]''''' (5q32)
| rowspan="3" |'''''[[CSF1R]]''''' (5q32)
|''MEF2D''
|''[[MEF2D]]''
|t(1;5)(q22;q32)
|t(1;5)(q22;q32)
|''MEF2D-CSF1R'' on der(5)
|''MEF2D-CSF1R'' on der(5)
|
|
|-
|-
|''SSBP2''
|''[[SSBP2]]''
|5q14.1q32 rearrangement
|5q14.1q32 rearrangement
|''SSBP2-CSF1R''
|''SSBP2-CSF1R''
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|-
|-
|''TBL1XR1''
|''[[TBL1XR1]]''
|t(3;5)(q26.3;q32)
|t(3;5)(q26.3;q32)
|''TBL1XR1-CSF1R'' on der(5)
|''TBL1XR1-CSF1R'' on der(5)
|-
|-
|'''''[[DGKH]]''''' (13q14.1)
|'''''[[DGKH]]''''' (13q14.1)
|''ZFAND3''
|''[[ZFAND3]]''
|t(6;13)(p21.2;q14.1)
|t(6;13)(p21.2;q14.1)
|''ZFAND3-DGKH''
|''ZFAND3-DGKH''
|-
|-
| rowspan="4" |'''''[[EPOR]]''''' (19p13.2)
| rowspan="4" |'''''[[EPOR]]''''' (19p13.2)
|''IGH''
|''[[IGH]]''
|ins(14;19)(q32;p13.2p13.2)
|ins(14;19)(q32;p13.2p13.2)
|''IGH/EPOR''
|''IGH/EPOR''
|
|
|-
|-
|''IGK''
|''[[IGK]]''
|ins(2;19)(p11.2;p13.2p13.2)
|ins(2;19)(p11.2;p13.2p13.2)
|''IGK/EPOR''
|''IGK/EPOR''
|
|
|-
|-
|''LAIR1''
|''[[LAIR1]]''
|inv(19)(p13.2q13.42)
|inv(19)(p13.2q13.42)
|''LAIR1-EPOR''
|''LAIR1-EPOR''
|Inversion of chromosome 19 juxtaposes ''EPOR'' to the upstream region of ''LAIR1''
|Inversion of chromosome 19 juxtaposes ''EPOR'' to the upstream region of ''LAIR1''
|-
|-
|''THADA''
|''[[THADA]]''
|t(2;19)(p21;p13.2)
|t(2;19)(p21;p13.2)
|''THADA-EPOR''
|''THADA-EPOR''
|-
|-
|'''''[[IL2RB]]''''' (22q12.3)
|'''''[[IL2RB]]''''' (22q12.3)
|''MYH9''
|''[[MYH9]]''
|22q12.3 rearrangement
|22q12.3 rearrangement
|''MYH9-IL2RB''
|''MYH9-IL2RB''
| rowspan="22" |'''''[[JAK2]]''''' (9p24.1)
| rowspan="22" |'''''[[JAK2]]''''' (9p24.1)
|''ATF7IP''
|''[[ATF7IP]]''
|t(9;12)(p24.1;p13.1)
|t(9;12)(p24.1;p13.1)
|''ATF7IP-JAK2'' on der(9)
|''ATF7IP-JAK2'' on der(9)
|
|
|-
|-
|''BCR''
|''[[BCR]]''
|t(9;22)(p24.1;q11.2)
|t(9;22)(p24.1;q11.2)
|''BCR-JAK2''
|''BCR-JAK2''
|Seen also in myeloproliferative neoplasms. Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Seen also in myeloproliferative neoplasms. Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''EBF1''
|''[[EBF1]]''
|t(5;9)(q33.3;p24.1)
|t(5;9)(q33.3;p24.1)
|''EBF1-JAK2'' on der(9)
|''EBF1-JAK2'' on der(9)
|
|
|-
|-
|''ETV6''
|''[[ETV6]]''
|t(9;12)(p24.1;p13.2)
|t(9;12)(p24.1;p13.2)
|''ETV6-JAK2'' on der(9)
|''ETV6-JAK2'' on der(9)
|
|
|-
|-
|''GOLGA5''
|''[[GOLGA5]]''
|t(9;14)(p24.1;q32.1)
|t(9;14)(p24.1;q32.1)
|''GOLGA5-JAK2''
|''GOLGA5-JAK2''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''HMBOX1''
|''[[HMBOX1]]''
|t(8;9)(p21.1;p24.1)
|t(8;9)(p21.1;p24.1)
|''HMBOX1-JAK2'' on der(9)
|''HMBOX1-JAK2'' on der(9)
|
|
|-
|-
|''OFD1''
|''[[OFD1]]''
|t(X;9)(p22.2;p24.1)
|t(X;9)(p22.2;p24.1)
|''OFD1-JAK2'' on der(9)
|''OFD1-JAK2'' on der(9)
|
|
|-
|-
|''PAX5''
|''[[PAX5]]''
|inv(9)(p13.2p24.1)
|inv(9)(p13.2p24.1)
|''PAX5-JAK2''
|''PAX5-JAK2''
|An inversion is required as genes are oriented in opposite directions
|An inversion is required as genes are oriented in opposite directions
|-
|-
|''PCM1''
|''[[PCM1]]''
|t(8;9)(p22;p24.1)
|t(8;9)(p22;p24.1)
|''PCM1-JAK2'' on der(9)
|''PCM1-JAK2'' on der(9)
|Seen also in myeloid/lymphoid neoplasms with eosinophilia
|Seen also in myeloid/lymphoid neoplasms with eosinophilia
|-
|-
|''PPFIBP1''
|''[[PPFIBP1]]''
|t(9;12)(p24.1;p11.2)
|t(9;12)(p24.1;p11.2)
|''PPFIBP1-JAK2'' on der(9)
|''PPFIBP1-JAK2'' on der(9)
|
|
|-
|-
|''RFX3''
|''[[RFX3]]''
|inv(9)(p24.1p24.2)
|inv(9)(p24.1p24.2)
|''RFX3-JAK2''
|''RFX3-JAK2''
|An inversion is required as genes are oriented in opposite directions
|An inversion is required as genes are oriented in opposite directions
|-
|-
|''SMU1''
|''[[SMU1]]''
|inv(9)(p21.1p24.1)
|inv(9)(p21.1p24.1)
|''SMU1-JAK2''
|''SMU1-JAK2''
|An inversion is required as genes are oriented in opposite directions
|An inversion is required as genes are oriented in opposite directions
|-
|-
|''SNX29''
|''[[SNX29]]''
|t(9;16)(p24.1;p13.1)
|t(9;16)(p24.1;p13.1)
|''SNX29-JAK2'' on der(9)
|''SNX29-JAK2'' on der(9)
|
|
|-
|-
|''SPAG9''
|''[[SPAG9]]''
|t(9;17)(p24.1;q21.3)
|t(9;17)(p24.1;q21.3)
|''SPAG9-JAK2'' on der(9)
|''SPAG9-JAK2'' on der(9)
|
|
|-
|-
|''SSBP2''
|''[[SSBP2]]''
|t(5;9)(q14.1;p24.1)
|t(5;9)(q14.1;p24.1)
|''SSBP2-JAK2'' on der(9)
|''SSBP2-JAK2'' on der(9)
|
|
|-
|-
|''STRN3''
|''[[STRN3]]''
|t(9;14)(p24.1;q12)
|t(9;14)(p24.1;q12)
|''STRN3-JAK2'' on der(9)
|''STRN3-JAK2'' on der(9)
|
|
|-
|-
|''TERF2''
|''[[TERF2]]''
|t(9;16)(p24.1;q22.1)
|t(9;16)(p24.1;q22.1)
|''TERF2-JAK2'' on der(9)
|''TERF2-JAK2'' on der(9)
|
|
|-
|-
|''TPR''
|''[[TPR]]''
|t(1;9)(q31.1;p24.1)
|t(1;9)(q31.1;p24.1)
|''TPR-JAK2'' on der(9)
|''TPR-JAK2'' on der(9)
|
|
|-
|-
|''USP25''
|''[[USP25]]''
|t(9;21)(p24.1;q21.1)
|t(9;21)(p24.1;q21.1)
|''USP25-JAK2''
|''USP25-JAK2''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''ZBTB46''
|''[[ZBTB46]]''
|t(9;20)(p24.1;q13.3)
|t(9;20)(p24.1;q13.3)
|''ZBTB46-JAK2'' on der(9)
|''ZBTB46-JAK2'' on der(9)
|
|
|-
|-
|''ZNF274''
|''[[ZNF274]]''
|t(9;19)(p24.1;q13.4)
|t(9;19)(p24.1;q13.4)
|''ZNF274-JAK2''
|''ZNF274-JAK2''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''ZNF340''
|''[[ZNF340]]''
|t(9;20)(p24.1;q13.3)
|t(9;20)(p24.1;q13.3)
|''ZNF340-JAK2'' on der(9)
|''ZNF340-JAK2'' on der(9)
(4q12)
(4q12)
|''FIP1L1''
|''[[FIP1L1]]''
|del(4)(q12q12)
|del(4)(q12q12)
|''FIP1L1-PDGFRA''
|''FIP1L1-PDGFRA''
|-
|-
| rowspan="8" |'''''[[PDGFRB]]''''' (5q32)
| rowspan="8" |'''''[[PDGFRB]]''''' (5q32)
|''ATF7IP''
|''[[ATF7IP]]''
|t(5;12)(q32;p13.1)
|t(5;12)(q32;p13.1)
|''ATF7IP-PDGFRB'' on der(5)
|''ATF7IP-PDGFRB'' on der(5)
|
|
|-
|-
|''EBF1''
|''[[EBF1]]''
|del(5)(q32q33.3)
|del(5)(q32q33.3)
|''EBF1-PDGFRB''
|''EBF1-PDGFRB''
|Interstitial deletion
|Interstitial deletion
|-
|-
|''ETV6''
|''[[ETV6]]''
|t(5;12)(q32;p13.2)
|t(5;12)(q32;p13.2)
|''ETV6-PDGFRB'' on der(5)
|''ETV6-PDGFRB'' on der(5)
|
|
|-
|-
|''SNX29''
|''[[SNX29]]''
|t(5;16)(q32;p13.1)
|t(5;16)(q32;p13.1)
|''SNX29-PDGFRB'' on der(5)
|''SNX29-PDGFRB'' on der(5)
|
|
|-
|-
|''SSBP2''
|''[[SSBP2]]''
|t(5;5)(q14.1;q32)
|t(5;5)(q14.1;q32)
|''SSBP2-PDGFRB''
|''SSBP2-PDGFRB''
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|On the same chromosome arm; however, a simple deletion cannot cause the fusion due to the orientation of genes
|-
|-
|''TNIP1''
|''[[TNIP1]]''
|del(5)(q32q33.1)
|del(5)(q32q33.1)
|''TNIP1-PDGFRB''
|''TNIP1-PDGFRB''
|Interstitial deletion. Seen also in myeloid/lymphoid neoplasms with eosinophilia
|Interstitial deletion. Seen also in myeloid/lymphoid neoplasms with eosinophilia
|-
|-
|''ZEB2''
|''[[ZEB2]]''
|t(2;5)(q22.3;q32)
|t(2;5)(q22.3;q32)
|''ZEB2-PDGFRB'' on der(5)
|''ZEB2-PDGFRB'' on der(5)
|
|
|-
|-
|''ZMYND8''
|''[[ZMYND8]]''
|t(5;20)(q32;q13.1)
|t(5;20)(q32;q13.1)
|''ZMYND8-PDGFRB'' on der(5)
|''ZMYND8-PDGFRB'' on der(5)
|-
|-
| rowspan="3" |'''''[[PTK2B]]''''' (8p21.2)
| rowspan="3" |'''''[[PTK2B]]''''' (8p21.2)
|''KDM6A''
|''[[KDM6A]]''
|t(X;8)(p11.3;p21.2)
|t(X;8)(p11.3;p21.2)
|''KDM6A-PTK2B'' on der(8)
|''KDM6A-PTK2B'' on der(8)
|
|
|-
|-
|''STAG2''
|''[[STAG2]]''
|t(X;8)(q25;p21.2)
|t(X;8)(q25;p21.2)
|''STAG2-PTK2B''
|''STAG2-PTK2B''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''TMEM2''
|''[[TMEM2]]''
|t(8;9)(p21.2;q21.1)
|t(8;9)(p21.2;q21.1)
|''TMEM2-PTK2B'' on der(8)
|''TMEM2-PTK2B'' on der(8)
|-
|-
| rowspan="3" |'''''[[TYK2]]''''' (19p13.2)
| rowspan="3" |'''''[[TYK2]]''''' (19p13.2)
|''MYB''
|''[[MYB]]''
|t(6;19)(q23.3;p13.2)
|t(6;19)(q23.3;p13.2)
|''MYB-TYK2'' on der(6)
|''MYB-TYK2'' on der(6)
|
|
|-
|-
|''SMARCA4''
|''[[SMARCA4]]''
|inv(19)(p13.2p13.2)
|inv(19)(p13.2p13.2)
|''SMARCA4-TYK2''
|''SMARCA4-TYK2''
|
|
|-
|-
|''ZNF340''
|''[[ZNF340]]''
|t(19;20)(p13.2;q13.3)
|t(19;20)(p13.2;q13.3)
|''ZNF340-TYK2''
|''ZNF340-TYK2''
| rowspan="9" |'''''ZNF384-''rearranged B-ALL'''
| rowspan="9" |'''''ZNF384-''rearranged B-ALL'''
| rowspan="9" |'''''[[ZNF384]]''''' (12p13.3) '' ''
| rowspan="9" |'''''[[ZNF384]]''''' (12p13.3) '' ''
|''ARID1B''
|''[[ARID1B]]''
|t(6;12)(q25.3;p13.3)
|t(6;12)(q25.3;p13.3)
|''ARID1B-ZNF384'' on der(6)
|''ARID1B-ZNF384'' on der(6)
|
|
|-
|-
|''BMP2K''
|''[[BMP2K]]''
|t(4;12)(q21.2;p13.3)
|t(4;12)(q21.2;p13.3)
|''BMP2K-ZNF384'' on der(4)
|''BMP2K-ZNF384'' on der(4)
|
|
|-
|-
|''CREBBP''
|''[[CREBBP]]''
|t(12;16)(p13.3;p13.3)
|t(12;16)(p13.3;p13.3)
|''CREBBP-ZNF384'' on der(16)
|''CREBBP-ZNF384'' on der(16)
|
|
|-
|-
|''EP300''
|''[[EP300]]''
|t(12;22)(p13.3;q13.2)
|t(12;22)(p13.3;q13.2)
|''EP300-ZNF384'' on der(22)
|''EP300-ZNF384'' on der(22)
|
|
|-
|-
|''EWSR1''
|''[[EWSR1]]''
|t(12;22)(p13.3;q12.2)
|t(12;22)(p13.3;q12.2)
|''EWSR1-ZNF384'' on der(22)
|''EWSR1-ZNF384'' on der(22)
|
|
|-
|-
|''SMARCA2''
|''[[SMARCA2]]''
|t(9;12)(p24.3;p13.3)
|t(9;12)(p24.3;p13.3)
|''SMARCA2-ZNF384''
|''SMARCA2-ZNF384''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''SYNRG''
|''[[SYNRG]]''
|t(12;17)(p13.3;q12)
|t(12;17)(p13.3;q12)
|''SYNGR-ZNF384''
|''SYNGR-ZNF384''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''TAF15''
|''[[TAF15]]''
|t(12;17)(p13.3;q12)
|t(12;17)(p13.3;q12)
|''TAF15-ZNF384'' on der(17)
|''TAF15-ZNF384'' on der(17)
|
|
|-
|-
|''TCF3''
|''[[TCF3]]''
|t(12;19)(p13.3;p13.3)
|t(12;19)(p13.3;p13.3)
|''TCF3-ZNF384'' on der(19)
|''TCF3-ZNF384'' on der(19)
| rowspan="6" |'''''MEF2D-''rearranged B-ALL'''
| rowspan="6" |'''''MEF2D-''rearranged B-ALL'''
| rowspan="6" |'''''[[MEF2D]]''' (1q22)''
| rowspan="6" |'''''[[MEF2D]]''' (1q22)''
|''BCL9''
|''[[BCL9]]''
|inv(1)(q21.2q22)
|inv(1)(q21.2q22)
|''MEF2D-BCL9''
|''MEF2D-BCL9''
|
|
|-
|-
|''CSF1R''
|''[[CSF1R]]''
|t(1;5)(q22;q32)
|t(1;5)(q22;q32)
|''MEF2D-CSF1R'' on der(5)
|''MEF2D-CSF1R'' on der(5)
|
|
|-
|-
|''FOXJ2''
|''[[FOXJ2]]''
|t(1;12)(q22;p13.3)
|t(1;12)(q22;p13.3)
|''MEF2D-FOXJ2'' on der(12)
|''MEF2D-FOXJ2'' on der(12)
|
|
|-
|-
|''HNRNPH1''
|''[[HNRNPH1]]''
|t(1;5)(q22;q35.3)
|t(1;5)(q22;q35.3)
|''MEF2D-HNRNPH1'' on der(5)
|''MEF2D-HNRNPH1'' on der(5)
|
|
|-
|-
|''HNRNPUL1''
|''[[HNRNPUL1]]''
|t(1;19)(q22;q13.2)
|t(1;19)(q22;q13.2)
|''MEF2D-HNRNPUL1''
|''MEF2D-HNRNPUL1''
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|Requires complex rearrangement due to incompatible orientation of genes with respect to chromosome arms
|-
|-
|''SS18''
|''[[SS18]]''
|t(1;18)(q22;q11.2)
|t(1;18)(q22;q11.2)
|''MEF2D-SS18'' on der(18)
|''MEF2D-SS18'' on der(18)