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From Compendium of Cancer Genome Aberrations
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Primary Author(s)

Primary authors will typically be those that initially create and complete the content of a page. If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the CCGA coordinators (contact information provided on the homepage). Additional global feedback or concerns are also welcome.

Cancer Category/Type

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Cancer Sub-Classification / Subtype

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Definition / Description of Disease

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Synonyms / Terminology

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Epidemiology / Prevalence

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Clinical Features

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Sites of Involvement

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Morphologic Features

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Immunophenotype

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Finding Marker
Positive (universal) CD1
Positive (subset) CD2
Negative (universal) CD3
Negative (subset) CD4

Additional Description:

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Chromosomal Rearrangements (Gene Fusions)

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Chromosomal Rearrangement Genes in Fusion (5’ or 3’ Segments) Pathogenic Derivative Prevalence
t(9;22) BCR-ABL1 der(22) 5%
t(8;21) RUNX1-RUNXT1 der(8) 5%

Additional Description:

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Characteristic Chromosomal Aberrations / Patterns

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Genomic Gain/Loss/LOH

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Chromosome Number Gain/Loss/Amp/LOH Region
8 Gain chr8:0-1000000
7 Loss chr7:0-1000000

Additional Description:

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Gene Mutations (SNV/INDEL)

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Gene Mutation Oncogene/Tumor Suppressor/Other Presumed Mechanism (LOF/GOF/Other; Driver/Passenger) Prevalence (COSMIC/TCGA/Other)
TP53 R273H Tumor Suppressor LOF 20%

Additional Description:

  • Other Mutations

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  • Concomitant Mutations

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  • Secondary Mutations

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  • Mutually Exclusive

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Epigenomics (Methylation)

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Genes and Main Pathways Involved

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Diagnostic Testing Methods

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Clinical Significance (Diagnosis, Prognosis and Therapeutic Implications)

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Familial Forms

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Other Information

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Links

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References

Reference Example, BOOK

  1. Arber DA, Brunning RD, Le Beau MM, Falini B, Vardiman JW, Porwit A, Thiele J, Bloomfield CD (2008). Acute myeloid leukaemia with recurrent genetic abnormalities, in World Health Organization Classification of Tumours of Haematopoietic and Lymphoid Tissues, 4thedition.Swerdlow SH, Campo E, Harris NL, Jaffe ES, Pileri SA, Stein H, Thiele J, Vardiman JW, Editors. IARC Press: Lyon, France, p117-118.

Reference Example, Journal Article

  1. Li Y, Mehta PK, Nizetic D, Kaneko Y, Chan GCF, Chan LC, Squire J, Scherer SW and Hitzler JK (2001). Fusion of two novel genes, RBM15 and MKL1, in the t(1;22)(p13;q13) of acute megakaryoblastic leukemia. Nat Genet 28:220-221, PMID 11431691.