EBV-positive nodal T- and NK-cell lymphoma

From Compendium of Cancer Genome Aberrations
Revision as of 19:41, 10 October 2024 by Fnu.Monika (talk | contribs)
Jump to navigation Jump to search


Haematolymphoid Tumours (WHO Classification, 5th ed.)

(General Instructions – The main focus of these pages is the clinically significant genetic alterations in each disease type. Use HUGO-approved gene names and symbols (italicized when appropriate), HGVS-based nomenclature for variants, as well as generic names of drugs and testing platforms or assays if applicable. Please complete tables whenever possible and do not delete them (add N/A if not applicable in the table and delete the examples); to add (or move) a row or column to a table, click nearby within the table and select the > symbol that appears to be given options. Please do not delete or alter the section headings. The use of bullet points alongside short blocks of text rather than only large paragraphs is encouraged. Additional instructions below in italicized blue text should not be included in the final page content. Please also see Author_Instructions and FAQs as well as contact your Associate Editor or Technical Support)

Primary Author(s)*

FNU Monika, MBBS; Andrew Siref, MD

Creighton University, Omaha, NE

WHO Classification of Disease

(Will be autogenerated; Book will include name of specific book and have a link to the online WHO site)

Structure Disease
Book
Category
Family
Type
Subtype(s)

Definition / Description of Disease

  • EBV-positive nodal T- and NK-cell lymphoma is a rare EBV-positive lymphoma of cytotoxic T- or NK-cell lineage, primarily involving lymph nodes in adults.[1]
  • Is a distinct entity in the Fifth WHO classification and as a provisional entity in the international consensus classification 2022.[2][3]

Synonyms / Terminology

nodal EBV+ cytotoxic T-cell lymphoma; nodal peripheral T-cell lymphoma, EBV-positive; primary nodal EBV-positive T/NK-cell lymphoma.[1]

Epidemiology / Prevalence

  • Rare lymphoma
  • Occurs mostly in eastern Asia
  • Affects mainly older adults (median age: 61–64 years) although cases in younger adults have been reported
  • The M:F ratio is 1.5–3.8:1 [1][4]

Clinical Features

Signs and Symptoms[1][5][6][7] Lymphadenopathy

Advanced clinical stage III/IV disease at diagnosis (86–88% of cases)

B symptoms (72–80%)

High or high/intermediate International Prognostic Index (IPI) score (64–87%)

Laboratory Findings Anemia

Leukopenia

Thrombocytopenia

Elevated serum lactate dehydrogenase

Sites of Involvement

  • Primarily lymph nodes (most commonly cervical, inguinal, and axillary), although limited extranodal involvement can be seen[1]
  • The liver and/or bone marrow (24–60% of cases); other extranodal sites, such as the skin and gastrointestinal tract, are less commonly involved[5][6][8]
  • No nasal involvement has been reported[1]

Morphologic Features

  • Architectural effacement of lymph node by a diffuse infiltrate of monotonous medium-sized to large lymphoid cells
  • The neoplastic cells have centroblastic appearance with vesicular chromatin
  • Less frequently, the neoplastic cells display large pleomorphic or mixed-cell morphology with abundant histiocytes and small lymphocytes in the background[1][9]
  • Lacks classic morphological findings of angioinvasion and necrosis seen in extranodal positive T- and NK-cell lymphomas[5]

Immunophenotype

Based on T-cell receptor protein expression and/or clonal TR gene rearrangement, EBV-positive nodal T- and NK-cell lymphoma immunophenotype is more of a T-cell lineage rather than NK-cell (> 80% of cases)

Finding Marker
Positive (universal) CD3, CD2, CD8 (63–72%) and CD56 (7–22%) cytotoxic molecules (TIA1, granzyme B, and perforin), EBER (ISH)
Positive (subset) TCRβ (43–64%), TCRγ (0–13%), CD30[2]
Negative (universal) CD4, CD5
Negative (subset) TCRβ and TCRγ (25%), CD4-/CD8- (21%), CD4+/CD8- (8%), CD4-/CD8+ (64%)[6]

Chromosomal Rearrangements (Gene Fusions)

No chromosomal rearrangements are identified.

The combination of the 2 pieces of chromosome 9 formed the fusion of the promoter plus exon 1 of DOCK8 and exons 2-7 of PD-L1 (DOCK8/PD-L1 fusion). https://doi.org/10.1182/bloodadvances.2023012019

Chromosomal Rearrangement Genes in Fusion (5’ or 3’ Segments) Pathogenic Derivative Prevalence Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
NA NA NA NA NA NA NA NA

Individual Region Genomic Gain / Loss / LOH

Put your text here and fill in the table (Instructions: Includes aberrations not involving gene fusions. Can include references in the table. Can refer to CGC workgroup tables as linked on the homepage if applicable. Do not delete table.)

Chr # Gain / Loss / Amp / LOH Minimal Region Genomic Coordinates [Genome Build] Minimal Region Cytoband Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
3[10] Loss 3q26.1 3q26.1 No No No EXAMPLE:


22[10] Loss 22q11.23 22q11.23 No No No
14[10] Loss 14q11.2 14q11.2 No No No Loss of chr14q11.2 is the most frequent CNA, consistent with this aberration as a marker of T-cell lineage.[10]
3[11] Gain 3p14.1 3p14.1 No No No Gain of 3p14.1 is found in 14.3% cases compared to 5.9% and 76.0% of ENKTL and PTCL-NOS cases, respectively
6[11] Gain 6p22.3 6p22.3 No No No Gain of 6p22.3 is found more frequently in ENKTL (20.6%) and PTCL-NOS (58.6%) than in PTCL-EBV (7.1%) (P=0.005).
6[11] Gain 6p22.1 6p22.1 No No No Gain of 6p22.1 is seen more in 21.4% of PTCL-EBV cases compared to 8.8% of ENKTL and 58.6% of PTCL-NOS cases
17[11] Gain 17q21.33 17q21.33 No No No

Characteristic Chromosomal Patterns

no specific characteristic chromosomal patterns are identified in EBV-positive nodal T- and NK-cell lymphoma

Chromosomal Pattern Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
NA NA NA NA NA

Gene Mutations (SNV / INDEL)

Based on the recent published literature, the most commonly mutated genes in EBV-positive nodal T- and NK-cell lymphoma identified in the Asian population are given below:

Gene; Genetic Alteration Presumed Mechanism (Tumor Suppressor Gene [TSG] / Oncogene / Other) Prevalence (COSMIC / TCGA / Other) Concomitant Mutations Mutually Exclusive Mutations Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
TET2 TSG 64%- 68%[11][12] DNMT3A[12] NA NA Yes No Both gene mutations are associated with clonal hematopoiesis and were found to have an overall poor survival in cohort of patients with concurrent mutations[12]
DNMT3A TSG 32%[12] TET2[12] NA NA Yes No Same as above
PIK3CD 33%[11] NA NA NA NA NA
STAT3 19%[11]
DDX3X 20%[11]
PTPRD 18%[11]
SETD2 8%[13]

Note: A more extensive list of mutations can be found in cBioportal (https://www.cbioportal.org/), COSMIC (https://cancer.sanger.ac.uk/cosmic), ICGC (https://dcc.icgc.org/) and/or other databases. When applicable, gene-specific pages within the CCGA site directly link to pertinent external content.

Epigenomic Alterations

Put your text here

Genes and Main Pathways Involved

Recent studies have demonstrated that EBV-positive nodal T- and NK-cell lymphoma is characterized by low genomic instability, upregulation of immune pathways (NFκB and check point protein PD-L1) that promote immune evasion, and downregulation of EBV miRNAS , T-cell receptor (TCR) signaling

Gene; Genetic Alteration Pathway Pathophysiologic Outcome
EXAMPLE: BRAF and MAP2K1; Activating mutations EXAMPLE: MAPK signaling EXAMPLE: Increased cell growth and proliferation
EXAMPLE: CDKN2A; Inactivating mutations EXAMPLE: Cell cycle regulation EXAMPLE: Unregulated cell division
EXAMPLE: KMT2C and ARID1A; Inactivating mutations EXAMPLE: Histone modification, chromatin remodeling EXAMPLE: Abnormal gene expression program

Genetic Diagnostic Testing Methods

Put your text here

Familial Forms

Put your text here (Instructions: Include associated hereditary conditions/syndromes that cause this entity or are caused by this entity.)

Additional Information

Put your text here

Links

(use the "Link" icon that looks like two overlapping circles at the top of the page) (Instructions: Highlight text to which you want to add a link in this section or elsewhere, select the "Link" icon at the top of the page, and search the name of the internal page to which you want to link this text, or enter an external internet address by including the "http://www." portion.)

References

(use the "Cite" icon at the top of the page) (Instructions: Add each reference into the text above by clicking on where you want to insert the reference, selecting the “Cite” icon at the top of the page, and using the “Automatic” tab option to search such as by PMID to select the reference to insert. The reference list in this section will be automatically generated and sorted. If a PMID is not available, such as for a book, please use the “Cite” icon, select “Manual” and then “Basic Form”, and include the entire reference.)

Notes

*Primary authors will typically be those that initially create and complete the content of a page. If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the CCGA coordinators (contact information provided on the homepage). Additional global feedback or concerns are also welcome.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Siok-Bian Ng, et al. EBV-positive nodal T- and NK-cell lymphoma. In: WHO Classification of Tumours Editorial Board. Haematolymphoid tumours [Internet]. Lyon (France): International Agency for Research on Cancer; 2024 [cited 2024 Oct 6]. (WHO classification of tumors series, 5th ed.; vol. 11). Available from: BlueBooksOnline (who.int)
  2. 2.0 2.1 Yu, Fang; et al. (2024-04). "EBV-positive Nodal T-Cell and NK-Cell Lymphoma: A Study of 26 Cases Including a Subset With Strong CD30 Expression Mimicking Anaplastic Large Cell Lymphoma". American Journal of Surgical Pathology. 48 (4): 406–416. doi:10.1097/PAS.0000000000002184. ISSN 0147-5185. Check date values in: |date= (help)
  3. Kato, Seiichi; et al. (2024-05-14). "EBV+ nodal T/NK-cell lymphoma associated with clonal hematopoiesis and structural variations of the viral genome". Blood Advances. 8 (9): 2138–2147. doi:10.1182/bloodadvances.2023012019. ISSN 2473-9529. PMC PMC11068532 Check |pmc= value (help). PMID 38429084 Check |pmid= value (help).CS1 maint: PMC format (link)
  4. Ha, Sang Yun; et al. (2013-07-01). "Epstein–Barr virus-positive nodal peripheral T cell lymphomas: Clinicopathologic and gene expression profiling study". Pathology - Research and Practice. 209 (7): 448–454. doi:10.1016/j.prp.2013.04.013. ISSN 0344-0338.
  5. 5.0 5.1 5.2 Jeon, Yoon Kyung; et al. (2015-07). "Epstein-Barr virus–positive nodal T/NK-cell lymphoma: an analysis of 15 cases with distinct clinicopathological features". Human Pathology. 46 (7): 981–990. doi:10.1016/j.humpath.2015.03.002. Check date values in: |date= (help)
  6. 6.0 6.1 6.2 Kato, Seiichi; et al. (2015-04). "T-cell Receptor (TCR) Phenotype of Nodal Epstein-Barr Virus (EBV)-positive Cytotoxic T-cell Lymphoma (CTL): A Clinicopathologic Study of 39 Cases". American Journal of Surgical Pathology. 39 (4): 462–471. doi:10.1097/PAS.0000000000000323. ISSN 0147-5185. Check date values in: |date= (help)
  7. Yu, Fang; et al. (2024-04). "EBV-positive Nodal T-Cell and NK-Cell Lymphoma: A Study of 26 Cases Including a Subset With Strong CD30 Expression Mimicking Anaplastic Large Cell Lymphoma". American Journal of Surgical Pathology. 48 (4): 406–416. doi:10.1097/PAS.0000000000002184. ISSN 0147-5185. Check date values in: |date= (help)
  8. Yamashita, Daisuke; et al. (2018-08). "Reappraisal of nodal Epstein‐Barr Virus‐negative cytotoxic T‐cell lymphoma: Identification of indolent CD 5 + diseases". Cancer Science. 109 (8): 2599–2610. doi:10.1111/cas.13652. ISSN 1347-9032. PMC 6113510. PMID 29845715. Check date values in: |date= (help)CS1 maint: PMC format (link)
  9. Attygalle, Ayoma D; et al. (2014-01). "Peripheral T‐cell and NK ‐cell lymphomas and their mimics; taking a step forward – report on the lymphoma workshop of the XVI th meeting of the European Association for Haematopathology and the Society for Hematopathology". Histopathology. 64 (2): 171–199. doi:10.1111/his.12251. ISSN 0309-0167. PMC 6364972. PMID 24128129. Check date values in: |date= (help)CS1 maint: PMC format (link)
  10. 10.0 10.1 10.2 10.3 Ng, Siok-Bian; et al. (2018-02-01). "Epstein-Barr virus-associated primary nodal T/NK-cell lymphoma shows a distinct molecular signature and copy number changes". Haematologica. 103 (2): 278–287. doi:10.3324/haematol.2017.180430. ISSN 1592-8721. PMC 5792272. PMID 29097495.CS1 maint: PMC format (link)
  11. 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 Wai, Cho Mar Myint; et al. (2022-01-13). "Immune pathway upregulation and lower genomic instability distinguish EBV-positive nodal T/NK-cell lymphoma from ENKTL and PTCL-NOS". Haematologica. 107 (8): 1864–1879. doi:10.3324/haematol.2021.280003. ISSN 1592-8721. PMC PMC9335103 Check |pmc= value (help). PMID 35021606 Check |pmid= value (help).CS1 maint: PMC format (link)
  12. 12.0 12.1 12.2 12.3 12.4 Kato, Seiichi; et al. (2024-05-14). "EBV+ nodal T/NK-cell lymphoma associated with clonal hematopoiesis and structural variations of the viral genome". Blood Advances. 8 (9): 2138–2147. doi:10.1182/bloodadvances.2023012019. ISSN 2473-9529. PMC PMC11068532 Check |pmc= value (help). PMID 38429084 Check |pmid= value (help).CS1 maint: PMC format (link)
  13. Climent, Fina; et al. (2023-09-01). "Cytotoxic peripheral T-cell lymphomas and EBV-positive T/NK-cell lymphoproliferative diseases: emerging concepts, recent advances, and the putative role of clonal hematopoiesis. A report of the 2022 EA4HP/SH lymphoma workshop". Virchows Archiv. 483 (3): 333–348. doi:10.1007/s00428-023-03616-4. ISSN 1432-2307. PMC PMC10542298 Check |pmc= value (help). PMID 37646869 Check |pmid= value (help).CS1 maint: PMC format (link)