Difference between revisions of "NPM1"

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(Created page with "==Primary Author(s)*== Put your text here __TOC__ ==Synonyms== Put your text here EXAMPLE: Tumor protein p53, ''LFS1, p53, BCC7, TRP53'' ==Genomic Location== '''Cytoban...")
 
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==Primary Author(s)*==
 
==Primary Author(s)*==
  
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Dr Kay Weng Choy MBBS, BMedSci, FAACB, Monash Health
  
 
__TOC__
 
__TOC__
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==Synonyms==
 
==Synonyms==
  
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Nucleophosmin 1, Nucleolar Phosphoprotein B23, Nucleolar Protein NO38, Numatri
  
 
EXAMPLE: Tumor protein p53, ''LFS1, p53, BCC7, TRP53''
 
EXAMPLE: Tumor protein p53, ''LFS1, p53, BCC7, TRP53''
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==Genomic Location==
 
==Genomic Location==
  
'''Cytoband:''' Put your text here. EXAMPLE: 17p13.1
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'''Cytoband:''' 5q35.1
  
 
'''Genomic Coordinates:'''  
 
'''Genomic Coordinates:'''  
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Put your text here  
 
Put your text here  
  
EXAMPLE: chr17:7,571,720-7,590,868 [hg19]
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chr5:170,814,120-170,838,141 (GRCh37/hg19)
  
EXAMPLE: chr17:7,668,402-7,687,538 [hg38]
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chr5:171,387,116-171,411,137 (GRCh38/hg38)
  
 
==Cancer Category/Type==
 
==Cancer Category/Type==
  
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[[Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms]]
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[[Acute Myeloid Leukemia (AML) with Mutated NPM1]]
  
 
==Gene Overview==
 
==Gene Overview==
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==Internal Pages==
 
==Internal Pages==
  
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[[Acute Myeloid Leukemia (AML) with Mutated NPM1]]
 
EXAMPLE [[Germline Cancer Predisposition Genes]]
 
  
 
==External Links==
 
==External Links==

Revision as of 10:32, 18 July 2018

Primary Author(s)*

Dr Kay Weng Choy MBBS, BMedSci, FAACB, Monash Health

Synonyms

Nucleophosmin 1, Nucleolar Phosphoprotein B23, Nucleolar Protein NO38, Numatri

EXAMPLE: Tumor protein p53, LFS1, p53, BCC7, TRP53

Genomic Location

Cytoband: 5q35.1

Genomic Coordinates:

Put your text here

chr5:170,814,120-170,838,141 (GRCh37/hg19)

chr5:171,387,116-171,411,137 (GRCh38/hg38)

Cancer Category/Type

Acute Myeloid Leukemia (AML) and Related Precursor Neoplasms

Acute Myeloid Leukemia (AML) with Mutated NPM1

Gene Overview

Put your text here.

Common Alteration Types

Put your text here and/or fill in the table with an X where applicable

Copy Number Loss Copy Number Gain LOH Loss-of-Function Mutation Gain-of-Function Mutation Translocation/Fusion
EXAMPLE: X EXAMPLE: X EXAMPLE: X EXAMPLE: X EXAMPLE: X EXAMPLE: X

Internal Pages

Acute Myeloid Leukemia (AML) with Mutated NPM1

External Links

Put your text here - Include as applicable links to: 1) Atlas of Genetics and Cytogenetics in Oncology and Haematology, 2) COSMIC, 3) CIViC, 4) St. Jude ProteinPaint, 5) Precision Medicine Knnowledgebase (Weill Cornell), 6) Cancer Index, 7) OncoKB, 8) My Cancer Genome, 9) UniProt, 10) Pfam, 11) GeneCards, 12) GeneReviews, and 13) Any gene-specific databases.

EXAMPLES

TP53 by Atlas of Genetics and Cytogenetics in Oncology and Haematology - detailed gene information

TP53 by COSMIC - sequence information, expression, catalogue of mutations

TP53 by CIViC - general knowledge and evidence-based variant specific information

TP53 by IARC - TP53 database with reference sequences and mutational landscape

TP53 by St. Jude ProteinPaint mutational landscape and matched expression data.

TP53 by Precision Medicine Knowledgebase (Weill Cornell) - manually vetted interpretations of variants and CNVs

TP53 by Cancer Index - gene, pathway, publication information matched to cancer type

TP53 by OncoKB - mutational landscape, mutation effect, variant classification

TP53 by My Cancer Genome - brief gene overview

TP53 by UniProt - protein and molecular structure and function

TP53 by Pfam - gene and protein structure and function information

TP53 by GeneCards - general gene information and summaries

GeneReviews - information on Li Fraumeni Syndrome

References

EXAMPLE Book

  1. Arber DA, et al., (2008). Acute myeloid leukaemia with recurrent genetic abnormalities, in World Health Organization Classification of Tumours of Haematopoietic and Lymphoid Tissues, 4th edition. Swerdlow SH, Campo E, Harris NL, Jaffe ES, Pileri SA, Stein H, Thiele J, Vardiman JW, Editors. IARC Press: Lyon, France, p117-118.

EXAMPLE Journal Article

  1. Li Y, et al., (2001). Fusion of two novel genes, RBM15 and MKL1, in the t(1;22)(p13;q13) of acute megakaryoblastic leukemia. Nat Genet 28:220-221, PMID 11431691.

Notes

*Primary authors will typically be those that initially create and complete the content of a page. If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the CCGA coordinators (contact information provided on the homepage). Additional global feedback or concerns are also welcome.