Difference between revisions of "GTS5:Klinefelter syndrome"

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<span style="color:#0070C0">(''General Instructions – The main focus of these pages is the clinically significant genetic alterations in each disease type. Use [https://www.genenames.org/ <u>HUGO-approved gene names and symbols</u>] (italicized when appropriate), [https://varnomen.hgvs.org/ HGVS-based nomenclature for variants], as well as generic names of drugs and testing platforms or assays if applicable. Please complete tables whenever possible and do not delete them (add N/A if not applicable in the table and delete the examples); to add (or move) a row or column to a table, click nearby within the table and select the > symbol that appears to be given options. Please do not delete or alter the section headings. The use of bullet points alongside short blocks of text rather than only large paragraphs is encouraged. Additional instructions below in italicized blue text should not be included in the final page content. Please also see'' </span><u>''[[Author_Instructions]]''</u><span style="color:#0070C0"> ''and [[Frequently Asked Questions (FAQs)|<u>FAQs</u>]] as well as contact your [[Leadership|<u>Associate Editor</u>]] or [mailto:CCGA@cancergenomics.org <u>Technical Support</u>])''</span>
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{{Under Construction}}
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<span style="color:#0070C0">(''General Instructions – The focus of these pages is the clinically significant genetic alterations in each disease type. This is based on up-to-date knowledge from multiple resources such as PubMed and the WHO classification books. The CCGA is meant to be a supplemental resource to the WHO classification books; the CCGA captures in a continually updated wiki-stye manner the current genetics/genomics knowledge of each disease, which evolves more rapidly than books can be revised and published. If the same disease is described in multiple WHO classification books, the genetics-related information for that disease will be consolidated into a single main page that has this template (other pages would only contain a link to this main page). Use [https://www.genenames.org/ <u>HUGO-approved gene names and symbols</u>] (italicized when appropriate), [https://varnomen.hgvs.org/ <u>HGVS-based nomenclature for variants</u>], as well as generic names of drugs and testing platforms or assays if applicable. Please complete tables whenever possible and do not delete them (add N/A if not applicable in the table and delete the examples); to add (or move) a row or column in a table, click nearby within the table and select the > symbol that appears. Please do not delete or alter the section headings. The use of bullet points alongside short blocks of text rather than only large paragraphs is encouraged. Additional instructions below in italicized blue text should not be included in the final page content. Please also see'' </span><u>''[[Author_Instructions]]''</u><span style="color:#0070C0"> ''and [[Frequently Asked Questions (FAQs)|<u>FAQs</u>]] as well as contact your [[Leadership|<u>Associate Editor</u>]] or [mailto:CCGA@cancergenomics.org <u>Technical Support</u>].)''</span>
 
==Primary Author(s)*==
 
==Primary Author(s)*==
Put your text here<span style="color:#0070C0"> (''<span class="blue-text">EXAMPLE:</span>'' Jane Smith, PhD) </span>
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Kathleen M. Bone, PhD, Medical College of Wisconsin
 
==WHO Classification of Disease==
 
==WHO Classification of Disease==
<span style="color:#0070C0">(Will be autogenerated; Book will include name of specific book and have a link to the online WHO site)</span>
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<span style="color:#0070C0">(''Instructions: This table’s content from the WHO book will be <u>autocompleted</u>.'')</span>
 
{| class="wikitable"
 
{| class="wikitable"
 
!Structure
 
!Structure
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|
 
|
 
|}
 
|}
==Definition / Description of Disease==
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==Related Terminology==
Put your text here <span style="color:#0070C0">(''Instructions: Brief description of approximately one paragraph - include disease context relative to other WHO classification categories, diagnostic criteria if applicable, and differential diagnosis if applicable. Other classifications can be referenced for comparison.'') </span>
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<span style="color:#0070C0">(''Instructions: This table will have the related terminology from the WHO book <u>autocompleted</u>.)''</span>
==Synonyms / Terminology==
 
Put your text here <span style="color:#0070C0">(''Instructions: Include currently used terms and major historical ones, adding “(historical)” after the latter.'') </span>
 
==Epidemiology / Prevalence==
 
Put your text here
 
==Clinical Features==
 
Put your text here and fill in the table <span style="color:#0070C0">(''Instruction: Can include references in the table. Do not delete table.'') </span>
 
 
{| class="wikitable"
 
{| class="wikitable"
|'''Signs and Symptoms'''
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|<span class="blue-text">EXAMPLE:</span> Asymptomatic (incidental finding on complete blood counts)
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|Acceptable
<span class="blue-text">EXAMPLE:</span> B-symptoms (weight loss, fever, night sweats)
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|47,XXY Syndrome
 
 
<span class="blue-text">EXAMPLE:</span> Lymphadenopathy (uncommon)
 
 
|-
 
|-
|'''Laboratory Findings'''
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|Not Recommended
|<span class="blue-text">EXAMPLE:</span> Cytopenias
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|
<span class="blue-text">EXAMPLE:</span> Lymphocytosis (low level)
 
 
|}
 
|}
==Sites of Involvement==
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Put your text here <span style="color:#0070C0">(''Instruction: Indicate physical sites; <span class="blue-text">EXAMPLE:</span> nodal, extranodal, bone marrow'') </span>
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==Definition/Description of Disease==
==Morphologic Features==
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Klinefelter syndrome (KS) is a genetic condition affecting males and results from the presence of an extra X chromosome (47,XXY). KS can lead to a range of physical, developmental and reproductive issues, including tall stature, reduced muscle mass, gynecomastia, small testes, infertility, azoospermia and learning difficulties.<ref>{{Cite journal|last=Bearelly|first=Priyanka|last2=Oates|first2=Robert|date=2019|title=Recent advances in managing and understanding Klinefelter syndrome|url=https://pubmed.ncbi.nlm.nih.gov/30755791|journal=F1000Research|volume=8|pages=F1000 Faculty Rev–112|doi=10.12688/f1000research.16747.1|issn=2046-1402|pmc=6352920|pmid=30755791}}</ref> There is a high incidence of symptom variability, and many individuals remain undiagnosed. KS should be suspected in adolescence in males with incomplete or delayed puberty, eunuchoid body habitus (disproportionately long arms and legs), gynecomastia, small and firm testes, low muscle mass, and psychosocial difficulties, and in adults with primary hypogonadism (small testes, low testosterone, high FSH/LH), azoospermia, reduced libido or erectile dysfunction, osteoporosis, and mild cognitive or language difficulties.<ref>{{Cite journal|last=Bojesen|first=Anders|last2=Gravholt|first2=Claus H.|date=2007-04|title=Klinefelter syndrome in clinical practice|url=https://pubmed.ncbi.nlm.nih.gov/17415352|journal=Nature Clinical Practice. Urology|volume=4|issue=4|pages=192–204|doi=10.1038/ncpuro0775|issn=1743-4289|pmid=17415352}}</ref><ref name=":0">{{Cite journal|last=Groth|first=Kristian A.|last2=Skakkebæk|first2=Anne|last3=Høst|first3=Christian|last4=Gravholt|first4=Claus Højbjerg|last5=Bojesen|first5=Anders|date=2013-01|title=Clinical review: Klinefelter syndrome--a clinical update|url=https://pubmed.ncbi.nlm.nih.gov/23118429|journal=The Journal of Clinical Endocrinology and Metabolism|volume=98|issue=1|pages=20–30|doi=10.1210/jc.2012-2382|issn=1945-7197|pmid=23118429}}</ref>
Put your text here <span style="color:#0070C0">(''Instructions: Brief description of typically approximately one paragraph'') </span>
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==Immunophenotype==
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The majority of patients (~80%-90%) with KS are 47,XXY by chromosome analysis, with the remainder being 48,XXXY, 48,XXYY, 49,XXXXY, or mosaic with a normal cell line.<ref>{{Cite journal|last=Tangshewinsirikul|first=Chayada|last2=Dulyaphat|first2=Wirada|last3=Tim-Aroon|first3=Thipwimol|last4=Parinayok|first4=Rachanee|last5=Chareonsirisuthigul|first5=Takol|last6=Korkiatsakul|first6=Veerawat|last7=Waisayarat|first7=Jariya|last8=Sirisreetreerux|first8=Pokket|last9=Tingthanatikul|first9=Yada|date=2020-12|title=Klinefelter Syndrome Mosaicism 46,XX/47,XXY: A New Case and Literature Review|url=https://pubmed.ncbi.nlm.nih.gov/32733741|journal=Journal of Pediatric Genetics|volume=9|issue=4|pages=221–226|doi=10.1055/s-0040-1713002|issn=2146-4596|pmc=7384885|pmid=32733741}}</ref><ref>{{Cite journal|last=Bearelly|first=Priyanka|last2=Oates|first2=Robert|date=2019|title=Recent advances in managing and understanding Klinefelter syndrome|url=https://pubmed.ncbi.nlm.nih.gov/30755791|journal=F1000Research|volume=8|pages=F1000 Faculty Rev–112|doi=10.12688/f1000research.16747.1|issn=2046-1402|pmc=6352920|pmid=30755791}}</ref> While the majority of mosaic KS patients have a normal male cell line, individuals with a normal female karyotype have also been described. Mosaic individuals typically present with a more variability clinical phenotype, and are often diagnosed due to infertility.<ref>{{Cite journal|last=Samplaski|first=Mary K.|last2=Lo|first2=Kirk C.|last3=Grober|first3=Ethan D.|last4=Millar|first4=Adam|last5=Dimitromanolakis|first5=Apostolos|last6=Jarvi|first6=Keith A.|date=2014-04|title=Phenotypic differences in mosaic Klinefelter patients as compared with non-mosaic Klinefelter patients|url=https://pubmed.ncbi.nlm.nih.gov/24502895|journal=Fertility and Sterility|volume=101|issue=4|pages=950–955|doi=10.1016/j.fertnstert.2013.12.051|issn=1556-5653|pmid=24502895}}</ref> Individuals with a normal female cell line may have ambiguous genitalia and the presence of ovotestes.<ref>{{Cite journal|last=Guess|first=Tiffany|last2=Wheeler|first2=Ferrin C.|last3=Yenamandra|first3=Ashwini|last4=Schilit|first4=Samantha L. P.|last5=Anderson|first5=Hannah S.|last6=Bone|first6=Kathleen M.|last7=Carstens|first7=Billie|last8=Conlin|first8=Laura|last9=Dulik|first9=Matthew C.|date=2024-10|title=A multicenter analysis of individuals with a 47,XXY/46,XX karyotype|url=https://pubmed.ncbi.nlm.nih.gov/39011769|journal=Genetics in Medicine: Official Journal of the American College of Medical Genetics|volume=26|issue=10|pages=101212|doi=10.1016/j.gim.2024.101212|issn=1530-0366|pmid=39011769}}</ref>
Put your text here and fill in the table <span style="color:#0070C0">(''Instruction: Can include references in the table. Do not delete table.'') </span>
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[[File:47,XXY.png|center|thumb|G-banded chromosome analysis of a PHA-stimulated peripheral blood specimen from a patient with Klinefelter Syndrome and a 47,XXY karyotype; Courtesy of Wisconsin Diagnostics Laboratories]]
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<br />
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==Epidemiology/Prevalence==
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The incidence of KS is approximately 1 in 500 to 1000 male births.<ref name=":0" /><ref>{{Cite journal|last=Berglund|first=Agnethe|last2=Stochholm|first2=Kirstine|last3=Gravholt|first3=Claus Højbjerg|date=2020-06|title=The epidemiology of sex chromosome abnormalities|url=https://pubmed.ncbi.nlm.nih.gov/32506765|journal=American Journal of Medical Genetics. Part C, Seminars in Medical Genetics|volume=184|issue=2|pages=202–215|doi=10.1002/ajmg.c.31805|issn=1552-4876|pmid=32506765}}</ref> However, some studies suggest the prevalence could be as high as 1:600 due to under diagnosis, as many individuals have mild or unnoticed symptoms.<ref>{{Cite journal|last=Bojesen|first=Anders|last2=Juul|first2=Svend|last3=Gravholt|first3=Claus Højbjerg|date=2003-02|title=Prenatal and postnatal prevalence of Klinefelter syndrome: a national registry study|url=https://pubmed.ncbi.nlm.nih.gov/12574191|journal=The Journal of Clinical Endocrinology and Metabolism|volume=88|issue=2|pages=622–626|doi=10.1210/jc.2002-021491|issn=0021-972X|pmid=12574191}}</ref> Only about 10% of cases are diagnosed before puberty, and many individuals remain undiagnosed. The median age of diagnosis is in the mid-30s.<ref name=":0" /> There is a significant association with advanced maternal age: around 50-60% of cases result from maternal non-disjunction during meiosis I, while the remaining cases arise from paternal non-disjunction during meiosis II or postzygotic mitotic errors, which are not associated with parental age.<ref>{{Cite journal|last=Thomas|first=N. S.|last2=Hassold|first2=T. J.|date=2003|title=Aberrant recombination and the origin of Klinefelter syndrome|url=https://pubmed.ncbi.nlm.nih.gov/12926525|journal=Human Reproduction Update|volume=9|issue=4|pages=309–317|doi=10.1093/humupd/dmg028|issn=1355-4786|pmid=12926525}}</ref>
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KS also carriers an increased risk for breast cancer and extragonadal germ cell tumors. Males with KS have a 20-30-fold increased risk of developing breast cancer over the average male population risk of approximately 1 in 726.<ref>{{Cite journal|last=Swerdlow|first=Anthony J.|last2=Schoemaker|first2=Minouk J.|last3=Higgins|first3=Craig D.|last4=Wright|first4=Alan F.|last5=Jacobs|first5=Patricia A.|last6=UK Clinical Cytogenetics Group|date=2005-08-17|title=Cancer incidence and mortality in men with Klinefelter syndrome: a cohort study|url=https://pubmed.ncbi.nlm.nih.gov/16106025|journal=Journal of the National Cancer Institute|volume=97|issue=16|pages=1204–1210|doi=10.1093/jnci/dji240|issn=1460-2105|pmid=16106025}}</ref> There is also an increased incidence of mediastinal germ cell tumors (M-GCTs) in KS patients, which can lead to precocious puberty due to human chorionic gonadotropin (hCG)-producing M-GCTs.<ref>{{Cite journal|last=Hasle|first=H.|last2=Jacobsen|first2=B. B.|last3=Asschenfeldt|first3=P.|last4=Andersen|first4=K.|date=1992-10|title=Mediastinal germ cell tumour associated with Klinefelter syndrome. A report of case and review of the literature|url=https://pubmed.ncbi.nlm.nih.gov/1425792|journal=European Journal of Pediatrics|volume=151|issue=10|pages=735–739|doi=10.1007/BF01959079|issn=0340-6199|pmid=1425792}}</ref><ref>{{Cite journal|last=Völkl|first=Thomas M. K.|last2=Langer|first2=Thorsten|last3=Aigner|first3=Thomas|last4=Greess|first4=Holger|last5=Beck|first5=Jörn D.|last6=Rauch|first6=Anita M.|last7=Dörr|first7=Helmuth G.|date=2006-03-01|title=Klinefelter syndrome and mediastinal germ cell tumors|url=https://pubmed.ncbi.nlm.nih.gov/16470792|journal=American Journal of Medical Genetics. Part A|volume=140|issue=5|pages=471–481|doi=10.1002/ajmg.a.31103|issn=1552-4825|pmid=16470792}}</ref> The pathophysiology is unclear, but is thought to be related to genes on the extra X chromosome.<ref>{{Cite journal|last=Rapley|first=E. A.|last2=Crockford|first2=G. P.|last3=Teare|first3=D.|last4=Biggs|first4=P.|last5=Seal|first5=S.|last6=Barfoot|first6=R.|last7=Edwards|first7=S.|last8=Hamoudi|first8=R.|last9=Heimdal|first9=K.|date=2000-02|title=Localization to Xq27 of a susceptibility gene for testicular germ-cell tumours|url=https://pubmed.ncbi.nlm.nih.gov/10655070|journal=Nature Genetics|volume=24|issue=2|pages=197–200|doi=10.1038/72877|issn=1061-4036|pmid=10655070}}</ref>
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==Genetic Abnormalities: Germline==
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Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Describe germline alteration(s) that cause the syndrome. In the notes, include additional details about most common mutations including founder mutations, mechanisms of molecular pathogenesis, alteration-specific prognosis and any other important genetics-related information. If multiple causes of the syndrome, include relative prevalence of genetic contributions to that syndrome. Please include references throughout the table. Do not delete the table.'')</span>
 
{| class="wikitable sortable"
 
{| class="wikitable sortable"
 
|-
 
|-
!Finding!!Marker
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!Gene!!Genetic Variant or Variant Type!!Molecular Pathogenesis!!Inheritance, Penetrance, Expressivity
 +
!Notes
 
|-
 
|-
|Positive (universal)||<span class="blue-text">EXAMPLE:</span> CD1
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|<span class="blue-text">EXAMPLE:</span> ''BRCA1''||<span class="blue-text">EXAMPLE:</span> Many||<span class="blue-text">EXAMPLE:</span> Multiple variant types leading to loss of function||<span class="blue-text">EXAMPLE:</span> Autosomal recessive,
 +
~30% penetrant for carriers
 +
|
 
|-
 
|-
|Positive (subset)||
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|<span class="blue-text">EXAMPLE:</span> Gene X
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|<span class="blue-text">EXAMPLE:</span> List the specific mutation
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|
 +
|
 +
|
 
|-
 
|-
|Negative (universal)||
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|
|-
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|
|Negative (subset)||
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|
 +
|
 +
|
 
|}
 
|}
==Chromosomal Rearrangements (Gene Fusions)==
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==Genetic Abnormalities: Somatic==
Put your text here and fill in the table <span style="color:#0070C0">(''Instruction: Can include references in the table. Do not delete table.'')</span>
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Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Describe significant second hit mutations, or somatic variants that present as a germline syndrome. In the notes, include details about most common mutations, mechanisms of molecular pathogenesis, alteration-specific prognosis and any other important genetic-related information. Please include references throughout the table. Do not delete the table.'')</span>
 
{| class="wikitable sortable"
 
{| class="wikitable sortable"
 
|-
 
|-
!Chromosomal Rearrangement!!Genes in Fusion (5’ or 3’ Segments)!!Pathogenic Derivative!!Prevalence
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!Gene!!Genetic Variant or Variant Type!!Molecular Pathogenesis!!Inheritance, Penetrance, Expressivity
!Diagnostic Significance (Yes, No or Unknown)
 
!Prognostic Significance (Yes, No or Unknown)
 
!Therapeutic Significance (Yes, No or Unknown)
 
 
!Notes
 
!Notes
 
|-
 
|-
|<span class="blue-text">EXAMPLE:</span> t(9;22)(q34;q11.2)||<span class="blue-text">EXAMPLE:</span> 3'ABL1 / 5'BCR||<span class="blue-text">EXAMPLE:</span> der(22)||<span class="blue-text">EXAMPLE:</span> 20% (COSMIC)
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|<span class="blue-text">EXAMPLE:</span> ''BRCA1''||<span class="blue-text">EXAMPLE:</span> Biallelic inactivation variants||<span class="blue-text">EXAMPLE:</span> Second hit mutation can occur as copy neutral LOH, inactivating mutation, deletion, promoter hypermethylation, or a structural abnormality disrupting the gene.||
<span class="blue-text">EXAMPLE:</span> 30% (add reference)
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|
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span>
 
The t(9;22) is diagnostic of CML in the appropriate morphology and clinical context (add reference). This fusion is responsive to targeted therapy such as Imatinib (Gleevec) (add reference).
 
|}
 
==Individual Region Genomic Gain / Loss / LOH==
 
Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Includes aberrations not involving gene fusions. Can include references in the table. Can refer to CGC workgroup tables as linked on the homepage if applicable. Do not delete table.'') </span>
 
{| class="wikitable sortable"
 
 
|-
 
|-
!Chr #!!Gain / Loss / Amp / LOH!!Minimal Region Genomic Coordinates [Genome Build]!!Minimal Region Cytoband
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|<span class="blue-text">EXAMPLE:</span> ''BRCA1''
!Diagnostic Significance (Yes, No or Unknown)
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|<span class="blue-text">EXAMPLE:</span> Reversion mutation
!Prognostic Significance (Yes, No or Unknown)
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|<span class="blue-text">EXAMPLE:</span> After exposure to certain therapies (e.g. PARP inhibitors), a second mutation may restore gene function as a resistance mechanism.
!Therapeutic Significance (Yes, No or Unknown)
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|
!Notes
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|
 
|-
 
|-
|<span class="blue-text">EXAMPLE:</span>
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|
7
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|
|<span class="blue-text">EXAMPLE:</span> Loss
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|
|<span class="blue-text">EXAMPLE:</span>
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|
chr7:1-159,335,973 [hg38]
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|
|<span class="blue-text">EXAMPLE:</span>
 
chr7
 
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span>
 
Presence of monosomy 7 (or 7q deletion) is sufficient for a diagnosis of AML with MDS-related changes when there is ≥20% blasts and no prior therapy (add reference).  Monosomy 7/7q deletion is associated with a poor prognosis in AML (add reference).
 
|-
 
|<span class="blue-text">EXAMPLE:</span>
 
8
 
|<span class="blue-text">EXAMPLE:</span> Gain
 
|<span class="blue-text">EXAMPLE:</span>
 
chr8:1-145,138,636 [hg38]
 
|<span class="blue-text">EXAMPLE:</span>
 
chr8
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span>
 
Common recurrent secondary finding for t(8;21) (add reference).
 
|}
 
==Characteristic Chromosomal Patterns==
 
Put your text here <span style="color:#0070C0">(''EXAMPLE PATTERNS: hyperdiploid; gain of odd number chromosomes including typically chromosome 1, 3, 5, 7, 11, and 17; co-deletion of 1p and 19q; complex karyotypes without characteristic genetic findings; chromothripsis. Do not delete table.'')</span>
 
{| class="wikitable sortable"
 
|-
 
!Chromosomal Pattern
 
!Diagnostic Significance (Yes, No or Unknown)
 
!Prognostic Significance (Yes, No or Unknown)
 
!Therapeutic Significance (Yes, No or Unknown)
 
!Notes
 
|-
 
|<span class="blue-text">EXAMPLE:</span>
 
Co-deletion of 1p and 18q
 
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span>
 
See chromosomal rearrangements table as this pattern is due to an unbalanced derivative translocation associated with oligodendroglioma (add reference).
 
 
|}
 
|}
==Gene Mutations (SNV / INDEL)==
 
Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: This table is not meant to be an exhaustive list; please include only genes/alterations that are recurrent and common as well either disease defining and/or clinically significant. Can include references in the table. For clinical significance, denote associations with FDA-approved therapy (not an extensive list of applicable drugs) and NCCN or other national guidelines if applicable; Can also refer to CGC workgroup tables as linked on the homepage if applicable as well as any high impact papers or reviews of gene mutations in this entity. Do not delete table.'') </span>
 
{| class="wikitable sortable"
 
|-
 
!Gene; Genetic Alteration!!'''Presumed Mechanism (Tumor Suppressor Gene [TSG] / Oncogene / Other)'''!!'''Prevalence (COSMIC /  TCGA / Other)'''!!'''Concomitant Mutations'''!!'''Mutually Exclusive Mutations'''
 
!'''Diagnostic Significance (Yes, No or Unknown)'''
 
!Prognostic Significance (Yes, No or Unknown)
 
!Therapeutic Significance (Yes, No or Unknown)
 
!Notes
 
|-
 
|<span class="blue-text">EXAMPLE:</span> ''TP53''; Variable LOF mutations
 
<span class="blue-text">EXAMPLE:</span>
 
 
''EGFR''; Exon 20 mutations
 
 
<span class="blue-text">EXAMPLE:</span> ''BRAF''; Activating mutations
 
|<span class="blue-text">EXAMPLE:</span> TSG
 
|<span class="blue-text">EXAMPLE:</span> 20% (COSMIC)
 
<span class="blue-text">EXAMPLE:</span> 30% (add Reference)
 
|<span class="blue-text">EXAMPLE:</span> ''IDH1'' R123H
 
|<span class="blue-text">EXAMPLE:</span> ''EGFR'' amplification
 
|<span class="blue-text">EXAMPLE:</span> Yes
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> No
 
|<span class="blue-text">EXAMPLE:</span> Excludes hairy cell leukemia (HCL) (add reference).
 
|}Note: A more extensive list of mutations can be found in cBioportal (https://www.cbioportal.org/), COSMIC (https://cancer.sanger.ac.uk/cosmic), ICGC (https://dcc.icgc.org/) and/or other databases. When applicable, gene-specific pages within the CCGA site directly link to pertinent external content.
 
==Epigenomic Alterations==
 
Put your text here
 
 
==Genes and Main Pathways Involved==
 
==Genes and Main Pathways Involved==
Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Can include references in the table. Do not delete table.'')</span>
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Put your text here and fill in the table <span style="color:#0070C0">(''Instructions: Please include references throughout the table. Do not delete the table.)''</span>
 
{| class="wikitable sortable"
 
{| class="wikitable sortable"
 
|-
 
|-
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|<span class="blue-text">EXAMPLE:</span> Histone modification, chromatin remodeling
 
|<span class="blue-text">EXAMPLE:</span> Histone modification, chromatin remodeling
 
|<span class="blue-text">EXAMPLE:</span> Abnormal gene expression program
 
|<span class="blue-text">EXAMPLE:</span> Abnormal gene expression program
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|-
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|
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|
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|}
 
|}
 
==Genetic Diagnostic Testing Methods==
 
==Genetic Diagnostic Testing Methods==
Put your text here
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Put your text here <span style="color:#0070C0">(''Instructions: Include recommended testing type(s) to identify the clinically significant genetic alterations.'')</span>
==Familial Forms==
 
Put your text here <span style="color:#0070C0">(''Instructions: Include associated hereditary conditions/syndromes that cause this entity or are caused by this entity.'') </span>
 
 
==Additional Information==
 
==Additional Information==
 
Put your text here
 
Put your text here
 
==Links==
 
==Links==
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==References==
 
==References==
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==Notes==
 
==Notes==
<nowiki>*</nowiki>Primary authors will typically be those that initially create and complete the content of a page.  If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the CCGA coordinators (contact information provided on the homepage).  Additional global feedback or concerns are also welcome.
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<nowiki>*</nowiki>Primary authors will typically be those that initially create and complete the content of a page.  If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the [[Leadership|''<u>Associate Editor</u>'']] or other CCGA representative.  When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author.
 +
 
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Prior Author(s):  
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[[Category:GTS5]]
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[[Category:DISEASE]]
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<references />

Latest revision as of 15:33, 10 March 2025

(General Instructions – The focus of these pages is the clinically significant genetic alterations in each disease type. This is based on up-to-date knowledge from multiple resources such as PubMed and the WHO classification books. The CCGA is meant to be a supplemental resource to the WHO classification books; the CCGA captures in a continually updated wiki-stye manner the current genetics/genomics knowledge of each disease, which evolves more rapidly than books can be revised and published. If the same disease is described in multiple WHO classification books, the genetics-related information for that disease will be consolidated into a single main page that has this template (other pages would only contain a link to this main page). Use HUGO-approved gene names and symbols (italicized when appropriate), HGVS-based nomenclature for variants, as well as generic names of drugs and testing platforms or assays if applicable. Please complete tables whenever possible and do not delete them (add N/A if not applicable in the table and delete the examples); to add (or move) a row or column in a table, click nearby within the table and select the > symbol that appears. Please do not delete or alter the section headings. The use of bullet points alongside short blocks of text rather than only large paragraphs is encouraged. Additional instructions below in italicized blue text should not be included in the final page content. Please also see Author_Instructions and FAQs as well as contact your Associate Editor or Technical Support.)

Primary Author(s)*

Kathleen M. Bone, PhD, Medical College of Wisconsin

WHO Classification of Disease

(Instructions: This table’s content from the WHO book will be autocompleted.)

Structure Disease
Book
Category
Family
Type
Subtype(s)

Related Terminology

(Instructions: This table will have the related terminology from the WHO book autocompleted.)

Acceptable 47,XXY Syndrome
Not Recommended

Definition/Description of Disease

Klinefelter syndrome (KS) is a genetic condition affecting males and results from the presence of an extra X chromosome (47,XXY). KS can lead to a range of physical, developmental and reproductive issues, including tall stature, reduced muscle mass, gynecomastia, small testes, infertility, azoospermia and learning difficulties.[1] There is a high incidence of symptom variability, and many individuals remain undiagnosed. KS should be suspected in adolescence in males with incomplete or delayed puberty, eunuchoid body habitus (disproportionately long arms and legs), gynecomastia, small and firm testes, low muscle mass, and psychosocial difficulties, and in adults with primary hypogonadism (small testes, low testosterone, high FSH/LH), azoospermia, reduced libido or erectile dysfunction, osteoporosis, and mild cognitive or language difficulties.[2][3]

The majority of patients (~80%-90%) with KS are 47,XXY by chromosome analysis, with the remainder being 48,XXXY, 48,XXYY, 49,XXXXY, or mosaic with a normal cell line.[4][5] While the majority of mosaic KS patients have a normal male cell line, individuals with a normal female karyotype have also been described. Mosaic individuals typically present with a more variability clinical phenotype, and are often diagnosed due to infertility.[6] Individuals with a normal female cell line may have ambiguous genitalia and the presence of ovotestes.[7]

G-banded chromosome analysis of a PHA-stimulated peripheral blood specimen from a patient with Klinefelter Syndrome and a 47,XXY karyotype; Courtesy of Wisconsin Diagnostics Laboratories


Epidemiology/Prevalence

The incidence of KS is approximately 1 in 500 to 1000 male births.[3][8] However, some studies suggest the prevalence could be as high as 1:600 due to under diagnosis, as many individuals have mild or unnoticed symptoms.[9] Only about 10% of cases are diagnosed before puberty, and many individuals remain undiagnosed. The median age of diagnosis is in the mid-30s.[3] There is a significant association with advanced maternal age: around 50-60% of cases result from maternal non-disjunction during meiosis I, while the remaining cases arise from paternal non-disjunction during meiosis II or postzygotic mitotic errors, which are not associated with parental age.[10]

KS also carriers an increased risk for breast cancer and extragonadal germ cell tumors. Males with KS have a 20-30-fold increased risk of developing breast cancer over the average male population risk of approximately 1 in 726.[11] There is also an increased incidence of mediastinal germ cell tumors (M-GCTs) in KS patients, which can lead to precocious puberty due to human chorionic gonadotropin (hCG)-producing M-GCTs.[12][13] The pathophysiology is unclear, but is thought to be related to genes on the extra X chromosome.[14]

Genetic Abnormalities: Germline

Put your text here and fill in the table (Instructions: Describe germline alteration(s) that cause the syndrome. In the notes, include additional details about most common mutations including founder mutations, mechanisms of molecular pathogenesis, alteration-specific prognosis and any other important genetics-related information. If multiple causes of the syndrome, include relative prevalence of genetic contributions to that syndrome. Please include references throughout the table. Do not delete the table.)

Gene Genetic Variant or Variant Type Molecular Pathogenesis Inheritance, Penetrance, Expressivity Notes
EXAMPLE: BRCA1 EXAMPLE: Many EXAMPLE: Multiple variant types leading to loss of function EXAMPLE: Autosomal recessive,

~30% penetrant for carriers

EXAMPLE: Gene X EXAMPLE: List the specific mutation

Genetic Abnormalities: Somatic

Put your text here and fill in the table (Instructions: Describe significant second hit mutations, or somatic variants that present as a germline syndrome. In the notes, include details about most common mutations, mechanisms of molecular pathogenesis, alteration-specific prognosis and any other important genetic-related information. Please include references throughout the table. Do not delete the table.)

Gene Genetic Variant or Variant Type Molecular Pathogenesis Inheritance, Penetrance, Expressivity Notes
EXAMPLE: BRCA1 EXAMPLE: Biallelic inactivation variants EXAMPLE: Second hit mutation can occur as copy neutral LOH, inactivating mutation, deletion, promoter hypermethylation, or a structural abnormality disrupting the gene.
EXAMPLE: BRCA1 EXAMPLE: Reversion mutation EXAMPLE: After exposure to certain therapies (e.g. PARP inhibitors), a second mutation may restore gene function as a resistance mechanism.

Genes and Main Pathways Involved

Put your text here and fill in the table (Instructions: Please include references throughout the table. Do not delete the table.)

Gene; Genetic Alteration Pathway Pathophysiologic Outcome
EXAMPLE: BRAF and MAP2K1; Activating mutations EXAMPLE: MAPK signaling EXAMPLE: Increased cell growth and proliferation
EXAMPLE: CDKN2A; Inactivating mutations EXAMPLE: Cell cycle regulation EXAMPLE: Unregulated cell division
EXAMPLE: KMT2C and ARID1A; Inactivating mutations EXAMPLE: Histone modification, chromatin remodeling EXAMPLE: Abnormal gene expression program

Genetic Diagnostic Testing Methods

Put your text here (Instructions: Include recommended testing type(s) to identify the clinically significant genetic alterations.)

Additional Information

Put your text here

Links

Put a link here or anywhere appropriate in this page (Instructions: Highlight the text to which you want to add a link in this section or elsewhere, select the "Link" icon at the top of the wiki page, and search the name of the internal page to which you want to link this text, or enter an external internet address by including the "http://www." portion.)

References

(use the "Cite" icon at the top of the page) (Instructions: Add each reference into the text above by clicking where you want to insert the reference, selecting the “Cite” icon at the top of the wiki page, and using the “Automatic” tab option to search by PMID to select the reference to insert. If a PMID is not available, such as for a book, please use the “Cite” icon, select “Manual” and then “Basic Form”, and include the entire reference. To insert the same reference again later in the page, select the “Cite” icon and “Re-use” to find the reference; DO NOT insert the same reference twice using the “Automatic” tab as it will be treated as two separate references. The reference list in this section will be automatically generated and sorted.)

Notes

*Primary authors will typically be those that initially create and complete the content of a page.  If a subsequent user modifies the content and feels the effort put forth is of high enough significance to warrant listing in the authorship section, please contact the Associate Editor or other CCGA representative.  When pages have a major update, the new author will be acknowledged at the beginning of the page, and those who contributed previously will be acknowledged below as a prior author.

Prior Author(s):  

  1. Bearelly, Priyanka; et al. (2019). "Recent advances in managing and understanding Klinefelter syndrome". F1000Research. 8: F1000 Faculty Rev–112. doi:10.12688/f1000research.16747.1. ISSN 2046-1402. PMC 6352920. PMID 30755791.
  2. Bojesen, Anders; et al. (2007-04). "Klinefelter syndrome in clinical practice". Nature Clinical Practice. Urology. 4 (4): 192–204. doi:10.1038/ncpuro0775. ISSN 1743-4289. PMID 17415352. Check date values in: |date= (help)
  3. Jump up to: 3.0 3.1 3.2 Groth, Kristian A.; et al. (2013-01). "Clinical review: Klinefelter syndrome--a clinical update". The Journal of Clinical Endocrinology and Metabolism. 98 (1): 20–30. doi:10.1210/jc.2012-2382. ISSN 1945-7197. PMID 23118429. Check date values in: |date= (help)
  4. Tangshewinsirikul, Chayada; et al. (2020-12). "Klinefelter Syndrome Mosaicism 46,XX/47,XXY: A New Case and Literature Review". Journal of Pediatric Genetics. 9 (4): 221–226. doi:10.1055/s-0040-1713002. ISSN 2146-4596. PMC 7384885 Check |pmc= value (help). PMID 32733741 Check |pmid= value (help). Check date values in: |date= (help)
  5. Bearelly, Priyanka; et al. (2019). "Recent advances in managing and understanding Klinefelter syndrome". F1000Research. 8: F1000 Faculty Rev–112. doi:10.12688/f1000research.16747.1. ISSN 2046-1402. PMC 6352920. PMID 30755791.
  6. Samplaski, Mary K.; et al. (2014-04). "Phenotypic differences in mosaic Klinefelter patients as compared with non-mosaic Klinefelter patients". Fertility and Sterility. 101 (4): 950–955. doi:10.1016/j.fertnstert.2013.12.051. ISSN 1556-5653. PMID 24502895. Check date values in: |date= (help)
  7. Guess, Tiffany; et al. (2024-10). "A multicenter analysis of individuals with a 47,XXY/46,XX karyotype". Genetics in Medicine: Official Journal of the American College of Medical Genetics. 26 (10): 101212. doi:10.1016/j.gim.2024.101212. ISSN 1530-0366. PMID 39011769 Check |pmid= value (help). Check date values in: |date= (help)
  8. Berglund, Agnethe; et al. (2020-06). "The epidemiology of sex chromosome abnormalities". American Journal of Medical Genetics. Part C, Seminars in Medical Genetics. 184 (2): 202–215. doi:10.1002/ajmg.c.31805. ISSN 1552-4876. PMID 32506765 Check |pmid= value (help). Check date values in: |date= (help)
  9. Bojesen, Anders; et al. (2003-02). "Prenatal and postnatal prevalence of Klinefelter syndrome: a national registry study". The Journal of Clinical Endocrinology and Metabolism. 88 (2): 622–626. doi:10.1210/jc.2002-021491. ISSN 0021-972X. PMID 12574191. Check date values in: |date= (help)
  10. Thomas, N. S.; et al. (2003). "Aberrant recombination and the origin of Klinefelter syndrome". Human Reproduction Update. 9 (4): 309–317. doi:10.1093/humupd/dmg028. ISSN 1355-4786. PMID 12926525.
  11. Swerdlow, Anthony J.; et al. (2005-08-17). "Cancer incidence and mortality in men with Klinefelter syndrome: a cohort study". Journal of the National Cancer Institute. 97 (16): 1204–1210. doi:10.1093/jnci/dji240. ISSN 1460-2105. PMID 16106025.
  12. Hasle, H.; et al. (1992-10). "Mediastinal germ cell tumour associated with Klinefelter syndrome. A report of case and review of the literature". European Journal of Pediatrics. 151 (10): 735–739. doi:10.1007/BF01959079. ISSN 0340-6199. PMID 1425792. Check date values in: |date= (help)
  13. Völkl, Thomas M. K.; et al. (2006-03-01). "Klinefelter syndrome and mediastinal germ cell tumors". American Journal of Medical Genetics. Part A. 140 (5): 471–481. doi:10.1002/ajmg.a.31103. ISSN 1552-4825. PMID 16470792.
  14. Rapley, E. A.; et al. (2000-02). "Localization to Xq27 of a susceptibility gene for testicular germ-cell tumours". Nature Genetics. 24 (2): 197–200. doi:10.1038/72877. ISSN 1061-4036. PMID 10655070. Check date values in: |date= (help)