Extranodal NK/T-cell lymphoma

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Haematolymphoid Tumours (WHO Classification, 5th ed.)

Primary Authors*

Teodora Popa, MD, Queen's University

Amanda Xu, MD, Queen's University

WHO Classification of Disease

Structure Disease
Book Haematolymphoid Tumours (5th ed.)
Category T-cell and NK-cell lymphoid proliferations and lymphomas
Family Mature T-cell and NK-cell neoplasms
Type EBV-positive NK-cell and T-cell lymphomas
Subtype(s) Extranodal NK/T-cell lymphoma

Definition / Description of Disease

  • Lymphoma of NK or T-cell lineage strongly associated with Epstein-Barr virus[1]. The lineage (NK or T-cell) has no clinical significance[2].
  • Divided into nasal and non-nasal types, the latter most often occurring in the skin and intestinal tract[3][1].
  • It is a destructive angiocentric disease characterized by vascular destruction and necrosis[4].
  • Differential diagnosis: sinonasal carcinomas and other lymphomas of the nasal cavity, such as diffuse large B-cell lymphoma[5].

Synonyms / Terminology

Extranodal NK/T-cell lymphoma, nasal type

EBV-positive extranodal NK/T-cell lymphoma

Not recommended: angiocentric lymphoma; lethal midline granuloma (historical)

Epidemiology / Prevalence

  • Most prevalent in East Asia and Latin America.
  • Represents less than 1% of non-Hodgkin lymphomas in the United States
    • Highest incidence among Asian Pacific Islanders and Hispanic populations[6].

Clinical Features

Signs and Symptoms Nasal mass, nasal obstruction, nasal bleeding

Hoarseness, dysphagia, halitosis, airway obstruction, dysphonia

Abdominal pain, GI bleeding, bowel perforation[7]

B symptoms (fever, weight loss, night sweats) associated with higher clinical stage[8]

Laboratory Findings No specific findings

Cytopenias

Sites of Involvement

  • Most are nasal type involving the upper aerodigestive tract
  • Extranasal type may involve skin, testis, and gastrointestinal tract[7].
  • Bone marrow involvement is uncommon[9].

Morphologic Features

Extranodal NK T-cell lymphoma, nasal type (HPS). Angiocentric and angiodestructive growth pattern.
Extranodal NK T-cell lymphoma, nasal type (HPS). Angiocentric and angiodestructive growth pattern.
  • Diffuse infiltrate composed of admixture of small, medium, or large and anaplastic cells.
  • Cells have irregularly folded nuclei and moderate pale cytoplasm.
  • Loss of mucosal glands.
  • Angiocentric and angiodestructive growth pattern with coagulative necrosis.
  • Usually see apoptotic cells and mitotic figures

Pitfalls:

  • Mucosal ulceration and superimposed inflammation can mimic an inflammatory process, particularly in less aggressive cases[10].
  • Pseudoepitheliomatous hyperplasia of the overlying mucosal epithelium can mimic squamous cell carcinoma[11][12].

Immunophenotype

Extranodal NK T-cell lymphoma stained with CD2 (top left), CD56 (red chromogen; top right), EBER in-situ hybridization (bottom left) and TIA1 (bottom right).


Finding Marker
Positive (universal) EBER / EBV
Positive (majority) cytoplasmic CD3ε, CD2, CD56, granzyme B, and TIA-1
Positive (subset) TCR αβ/γδ, HLA-DR, CD25, pSTAT3, CXCL13, IRF4/MUM1, CD16, Fas, FasL, MATK, CD30[13][14][15][16][17][18][19].
Negative (universal) CD4, CD8
Negative (subset) Surface CD3 (subset of T-cell lineage)[7]

Chromosomal Rearrangements (Gene Fusions)

Chromosomal Rearrangement Genes in Fusion (5’ or 3’ Segments) Pathogenic Derivative Prevalence Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
N/A N/A N/A N/A N/A N/A N/A N/A

Individual Region Genomic Gain / Loss / LOH

Chr # Gain / Loss / Amp / LOH Minimal Region Genomic Coordinates [Genome Build] Minimal Region Cytoband Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
6 Loss 6q21-25[20][21] Unknown Unknown Unknown This locus harbours multiple candidate tumour suppressor genes including ATG5, AIM1, PRDM1, PTPRK, HACE1, and FOXO3[22][23][24].

Other less common chromosomal alterations include gain of 1p, 2q, 6p, 10q, 11q, 12q, 13q, 17q, 19p, 20q, and Xp; and loss of 1p36, 2p16, 4q12, 4q31-32, 5p14, 5q34-35, 6q13-14, 6q16-27, 11q22-23, 12q, 13q12-14, 13q14-34, 17p13, and entire chromosome X[25][26][27][28][29].

Characteristic Chromosomal Patterns

Chromosomal Pattern Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
Isochromosome 6p[30] Unknown Unknown Unknown N/A
Isochromosome 7q[31] Unknown Unknown Unknown N/A

Gene Mutations (SNV / INDEL)

Gene; Genetic Alteration Presumed Mechanism (Tumor Suppressor Gene [TSG] / Oncogene / Other) Prevalence (COSMIC / TCGA / Other) Concomitant Mutations Mutually Exclusive Mutations Diagnostic Significance (Yes, No or Unknown) Prognostic Significance (Yes, No or Unknown) Therapeutic Significance (Yes, No or Unknown) Notes
JAK3[32][33] Oncogene 35.4%[32] Unknown Unknown Pan-JAK and selective JAK3 inhibitors have been suggested as potential therapeutic options[32][34]. Clinical trials evaluating JAK inhibitors are in progress.
STAT3[35][36][37] Oncogene 6-26%[36][37] Unknown Unknown STAT3 inhibitor may have potential therapeutic benefit in patients with STAT3 activating mutation[38].
STAT5B[35][36] Oncogene 6%[36] Unknown Unknown Unknown
PTPRK[24] Other (acts on JAK/STAT pathway; underexpression leads to STAT3 activation[24]) Unknown Unknown Unknown
MYC[39] Oncogene Unknown Unknown Unknown
PDGFRA[40] Oncogene Unknown Unknown Unknown
EZH2[41] Oncogene Unknown Unknown Unknown
RAS/KRAS/HRAS Oncogene <5%[42][43] Unknown Unknown Unknown
FAS Oncogene 50-60%[44][45] Unknown Unknown Unknown
KIT Oncogene 5-71% (China)

22% (Japan)[42][46]

Unknown Unknown Unknown
CTNNB1 Oncogene 16-30%[42][47] Unknown Unknown Unknown
DDX3X[35] Epigenetic modifier (RNA helicase) 20%[35] Unknown Unknown Unknown
KMT2D (MLL2)[35] Epigenetic modifier 38.2%[37] Unknown Unknown Unknown
ARID1A[35] Epigenetic modifier Unknown Unknown Unknown
EP300[35] Epigenetic modifier Unknown Unknown Unknown
ASXL3[35] Epigenetic modifier Unknown Unknown Unknown
BCOR[37] Epigenetic modifier 38.2%[37] Unknown Unknown Unknown
TP53[35] Tumor suppressor gene 24-62%[48][49] Unknown Yes, associated with advanced stage disease[48]. Unknown
RUNX3[50] Tumor suppressor gene Unknown Unknown Unknown
MGA[35] Tumor suppressor gene Unknown Unknown Unknown
PRDM1[51][23][52] Tumor suppressor gene Methylated in NK-92, KHYG-1, SNK-1, SNK-6 cell lines, 12/17 cases; Deleted in 8/18 cases; Mutated in NK-92 and KAI3 cell lines, 1/26 cases[51] Unknown Unknown Unknown
ATG5[51] Tumor suppressor gene Unknown Unknown Unknown
AIM1[51] Tumor suppressor gene Methylated in NK-92, HANK1, NK-YS, SNK-1, YT cell lines; Mutated in in SNK-1 and SNK-6 cell lines[51] Unknown Unknown Unknown
FOXO3[51][23] Tumor suppressor gene Mutated in 2/26 NKTCL and 1/9 ANKL[51] Unknown Unknown Unknown
HACE1[51][40] Tumor suppressor gene Mutated in 6/9 (67%) cell lines and 5/15 (33%) primary tumors[53] Unknown Unknown Unknown

Note: A more extensive list of mutations can be found in cBioportal (https://www.cbioportal.org/), COSMIC (https://cancer.sanger.ac.uk/cosmic), ICGC (https://dcc.icgc.org/) and/or other databases. When applicable, gene-specific pages within the CCGA site directly link to pertinent external content.

Epigenomic Alterations

A 2015 study by Lu, et al uncovered recurrent mutations in the RNA helicase gene DDX3X and other epigenetic modifiers including KMT2D (MLL2), ARID1A, EP300, and ASXL3[35].

Similarly, a 2015 study by Lee, et al reported that histone modification-related genes, including BCOR and KMT2D (MLL2), accounted for 38.2% of 34 ENKTL samples by next-generation sequencing[37].

Genes and Main Pathways Involved

Huang, et al described deregulation of several signaling pathways in NK T-cell lymphoma, main ones listed below[40]. A review by De Mel, et al, also outlines key molecular pathways involved in the pathogenesis of ENKTL[54].

Gene; Genetic Alteration Pathway Pathophysiologic Outcome
JAK3, STAT3, and STAT5B; Activating mutations[40][54] JAK/STAT pathway Increased cell growth and proliferation
MYC, RUNX3[54] MYC Increased cell proliferation and survival
AKT and related genes[40] AKT pathway Increased cell growth, proliferation and survival
NF-κB related genes[40][54] NF-κB pathway Increased cell proliferation
PDGFRA[40][54] PDGF pathway Increased cell proliferation and survival
NOTCH1[54] NOTCH1 pathway Increased cell proliferation
AURKA[54] Aurora kinase pathway[39] Increased cell proliferation and cell cycle dysregulation

Genetic Diagnostic Testing Methods

  • Select cases may require TCR gene rearrangement studies; otherwise, not routinely performed.
  • EBV PCR testing may be used for disease monitoring

Familial Forms

N/A

Additional Information

N/A

Links

5th edition World Health Organization (WHO) classification system

References

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Notes

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